Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr14159g00001 ATGGCCAAATATCTCTATTTGTTTGTGTTGCTTTCTTTAACCGTTTTAATCCCTACCCTGAATGCCAATGAATTAGAGACTAATGAGTATTGGGTGAATCATACCAACGAGTTCGACACATATTGGCAGGAAAGAGCTAAGGTGGCTAAAATTGACAGCAGTGCTGCTTACTTTGAAGATCCATATGCAGTCTCTGGCAACTTTACTTCCAGTATTAGCGAACTCATAGTTGGAAAAGATAAAAGAAGGAATTTGAGGGGACATCGTGCACAAGGTCCATGTCTGGCTACCAACCCCATCGATAGCTGCTGGAGGTGTGACCCTAACTGGGCCAACAACCGTCAAAAGCTCGCTGATTGTGTCCAGGGCTTTGGCAGAAACACCGTCGGAGGAAAAGGCGGTCCATTCTATGTGGTCACCGATCCCTCAGATGACGAGTTGGTGGACCTTAGGCCTGGCACTCTTCGCCATGCTGTTACACGGGAAGGTCCACTGTGGATCATCTTCGCCCGCAGCATGTTGATTACCCTTCAACAGGAGCTCATCATGAACAGCAATAAGACTATTGATGGAAGAGGAGTTGAGGTCTACATCGCCTACGGTGCTGGCATCACTGTCCAGTTTGTCAAGAACATCATTATCCATGGGATTAAGATCTTCGACATTCAGGTTCGTGAAGGTGGCATGATCAGAGATTCTGAAGGTCATTATGGCCTCAGGACTCGGAGTGATGGTGATGGAATCTCCATTTTTGGCTCTAGCAATATTTGGGTTGACCATGTTTCCATGAGAAATTGCTCAGATGGACTCATCGATATTATCATGGGATCCACTGCCATTACTATCTCTAACGGTCATTACACTGACCACAATGAGGCTTTTTTGTTTGGTGCCAATGATAAACATTTTGAGGACAAGATCATGCAAATTACTATGGCATTCAACCATTTTGGCAAGAGATTAGTTCAAAGGATGCCCAGAGCTAGATTTGGTTTTGTCCATGTGGTTAACAATGACTACACTCACTGGGAAATGTATGCCATTGGTGGTAGCATGAACCCTACCATCATCAGTGAGGGTAATAGATTCATTGGCCCTGACGACAGAAATGCCAAGGAGATTACAAAGAGAGAGTATACTCCAGAGAATATCTGGACAAATTGGCAGTGGAGATCTATCAACGATGAGTACATGAATGGAGCATTTTTCGTGCAATCCGGGCCTGAGCTGGTTAACAGACCATTCTCAAGCGAAGACATGATCATAGCTAAGCCCGGAAGTTGCGTGGGAAGACTTACACGATATGCTGGTAGTCTTAGGTGCAGGGATGGCAAACCTTGTTAA 1344 0.4501 MAKYLYLFVLLSLTVLIPTLNANELETNEYWVNHTNEFDTYWQERAKVAKIDSSAAYFEDPYAVSGNFTSSISELIVGKDKRRNLRGHRAQGPCLATNPIDSCWRCDPNWANNRQKLADCVQGFGRNTVGGKGGPFYVVTDPSDDELVDLRPGTLRHAVTREGPLWIIFARSMLITLQQELIMNSNKTIDGRGVEVYIAYGAGITVQFVKNIIIHGIKIFDIQVREGGMIRDSEGHYGLRTRSDGDGISIFGSSNIWVDHVSMRNCSDGLIDIIMGSTAITISNGHYTDHNEAFLFGANDKHFEDKIMQITMAFNHFGKRLVQRMPRARFGFVHVVNNDYTHWEMYAIGGSMNPTIISEGNRFIGPDDRNAKEITKREYTPENIWTNWQWRSINDEYMNGAFFVQSGPELVNRPFSSEDMIIAKPGSCVGRLTRYAGSLRCRDGKPC 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr14159g00001 447 SMART amb_all 172 369 IPR002022 -
Mupr14159g00001 447 Pfam Pectate lyase 181 363 IPR002022 -
Mupr14159g00001 447 Pfam Pectate lyase, N terminus 36 85 IPR007524 GO:0030570
Mupr14159g00001 447 Gene3D - 97 440 IPR012334 -
Mupr14159g00001 447 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Mupr14159g00001 447 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Mupr14159g00001 447 PRINTS Pollen allergen Amb family signature 346 365 IPR018082 -
Mupr14159g00001 447 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Mupr14159g00001 447 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Mupr14159g00001 447 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Mupr14159g00001 447 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Mupr14159g00001 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Mupr14159g00001 447 PANTHER PECTATE LYASE 18-RELATED 53 445 IPR045032 GO:0030570
Mupr14159g00001 447 SUPERFAMILY Pectin lyase-like 98 438 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr14159g00001 Mupr-Chr14159 965 2614 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr14159g00001 1 447 Polysaccharide Lyase AT1G14420 54.860 0.0 521