Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr14054g00001 ATGACTACTCGAATTGCGCCCGGTGTCGGAGCCAATTTGCTCGGCCAACACGCCGCCGAGAGGAATCAAGACGCTACTGCTTATGTCGGCAATCTCGATCCTCAGATAAGCGAGGAGTTATTATGGGAGTTGTTTGTTCAGGCTGGTCCAGTCGTTAATGTCTATGTTCCCAAGGATAGAGTCACCAACCAACATCAGGGTTACGGATTTGTTGAATTCCGGAGCGAGGAAGATGCTGACTATGCCATCAAGGTGCTTAACATGATTAAGCTTTATGGGAAACCGATTCGAGTGAATAAGGCATCCCAAGATAAGAAGAGCTTGGATGTTGGGGCAAACCTTTTCATTGGCAATCTTGATCCTGATGTTGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGATCATGAGAGATCCCGAGACAGGAAATTCGCGTGGTTTTGGCTTCATTAGCTATGATTCATTTGAGGCATCTGATTCAGCCATTGAGGCAATGAATGGACAATATCTTTGCAATCGTCAAATTACAGTGTCATATGCTTATAAGAAAGACACTAAGGGCGAGCGGCATGGTACCCCCGCAGAAAGAGTTTTGGCCGCAAGTAATCCAACTGCACAGAAGAGCAGGCCTCATACTTTATTTGCCAGTGGACCTCCAACACTTCCCAATGTTCCTCAGGCCAATGGAGTTGCTCCAGTGCCTCCCCGACCCTTTGCTAATGGGGTCGCTCCGGCTTCTATTCCTGCCCTCCGTCCACCACCTCCTCAAGCCGCAGCTTTCCAGCCTATGCCGGTGGCTGGACAACCAACATGGCATCATCAGCAACAGCCAGGTCAAACAATCTTACCACCTGCAATGCCTCCACCTCAACTCCAGCAGTTCAGGCCACCTCACCCTGGCATGCAGCAGATGCCACCACCTCCACAAGCTCCTCCCAGGCCTCTTCCACCACCAGCAGTAATGGCAAGTCAGCCACCACCTGTTTGGCGGCCGCCACCACCTCAGCAACAGGGTGGACGGCCTTTCTACCCTCAGTCCTCAATGCCCCCGCCACCACCTCCC 1089 0.5078 MTTRIAPGVGANLLGQHAAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPTLPNVPQANGVAPVPPRPFANGVAPASIPALRPPPPQAAAFQPMPVAGQPTWHHQQQPGQTILPPAMPPPQLQQFRPPHPGMQQMPPPPQAPPRPLPPPAVMASQPPPVWRPPPPQQQGGRPFYPQSSMPPPPPP 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr14054g00001 363 MobiDBLite consensus disorder prediction 209 232 - -
Mupr14054g00001 363 CDD RRM1_SF3B4 28 100 IPR034158 -
Mupr14054g00001 363 PANTHER SPLICING FACTOR 3B SUBUNIT 4 14 357 - -
Mupr14054g00001 363 CDD RRM2_SF3B4 111 193 IPR034159 -
Mupr14054g00001 363 MobiDBLite consensus disorder prediction 290 363 - -
Mupr14054g00001 363 MobiDBLite consensus disorder prediction 209 363 - -
Mupr14054g00001 363 Gene3D - 111 200 IPR012677 -
Mupr14054g00001 363 FunFam Splicing factor 3b subunit 4 16 108 - -
Mupr14054g00001 363 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Mupr14054g00001 363 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Mupr14054g00001 363 FunFam splicing factor 3B subunit 4 109 200 - -
Mupr14054g00001 363 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Mupr14054g00001 363 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Mupr14054g00001 363 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Mupr14054g00001 363 Gene3D - 16 110 IPR012677 -
Mupr14054g00001 363 MobiDBLite consensus disorder prediction 237 269 - -
Mupr14054g00001 363 SMART rrm1_1 113 187 IPR000504 GO:0003723
Mupr14054g00001 363 SMART rrm1_1 26 99 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr14054g00001 Mupr-Chr14054 2778 7930 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr14054g00001 16 98 Eukaryotic Initiation Factors Gene Family AT4G34110 37.349 1.50e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr14054g00001 K12831 - gmx:100792707 574.704