Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr14045g00003 ATGGGTATTCGCTTTTGTTTCTTGATGGTGTATATTCTTGGAGAAAATTCCATGGAATCTAAATACTTTGACTCCAATGGGGAAGTCTCTCTAAAGCAAAAATCAAAATCCATTTCATCAGAGACAACAATGTCCACTAGTGAAAATGATTGCTTTGATTGCAACATTTGCATGGAATCAGCACATGACCCTGTGGTCACACTCTGTGGTCATCTTTACTGCTGGCCATGCATATACAAGTGGCTTGATGTCAAAAGCTCCTCTGTTGAACCAGACCAGCAACAGCAGACATGCCCAGTTTGTAAAGCTGAGATCTCTCCCACTTCATTAGTCCCTCTCTACGGCCGCGGATCATCTAACTCAGAATCCAAAGCCAAGAAACTCCAGATGAGTATGGGGATACCTCACAGACCATCTCCTTACAACCTCAATGCTATGTTAACTTCTTCTCGCGCCCCGAATTCACACCCCGGCACCCAACTGCATCCAAGTTATTTCCAGGCACCATCAAGGCCATTTCATTACCAGCAGTACTTCCCTCACCTTTATGGAAGTTATAGCACCAATGGATTGCCTTATCTTGGAGGTGCTGCTATCACTAGTTTCTTTAATCCCATGATTGGTATGTTTGGAGAGATGGTATTGACAAGGATTTTTGGGGTCTCAGATGCAAATTTGTTTGCATACCCTCATAATGGAAGTGGCAGTCCTAGAATGAGAAGGCAGGAAATGCAGATTGACAATATGGCATGCATGCAACTAGATGAAAGTTATGTTCCTGCTCTGAAGCCAAAGGATGTACAAGCCAGATGGGAGCAGTTTGCAAGAGGCAAAGGGCGAAGAAGAATTCTTGAAATGTAA 861 0.4344 MGIRFCFLMVYILGENSMESKYFDSNGEVSLKQKSKSISSETTMSTSENDCFDCNICMESAHDPVVTLCGHLYCWPCIYKWLDVKSSSVEPDQQQQTCPVCKAEISPTSLVPLYGRGSSNSESKAKKLQMSMGIPHRPSPYNLNAMLTSSRAPNSHPGTQLHPSYFQAPSRPFHYQQYFPHLYGSYSTNGLPYLGGAAITSFFNPMIGMFGEMVLTRIFGVSDANLFAYPHNGSGSPRMRRQEMQIDNMACMQLDESYVPALKPKDVQARWEQFARGKGRRRILEM 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr14045g00003 286 CDD RING-HC_AtRMA-like 52 103 - -
Mupr14045g00003 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 127 IPR013083 -
Mupr14045g00003 286 FunFam E3 ubiquitin-protein ligase RMA1H1 27 122 - -
Mupr14045g00003 286 SUPERFAMILY RING/U-box 50 114 - -
Mupr14045g00003 286 ProSiteProfiles Zinc finger RING-type profile. 54 102 IPR001841 -
Mupr14045g00003 286 Pfam RING-type zinc-finger 54 99 IPR027370 -
Mupr14045g00003 286 ProSitePatterns Zinc finger RING-type signature. 69 78 IPR017907 -
Mupr14045g00003 286 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 28 249 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mupr14045g00003 286 SMART ring_2 54 101 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr14045g00003 Mupr-Chr14045 15969 17778 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr14045g00003 26 250 C3H Transcription Factor Family AT4G27470 45.415 8.49e-57 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr14045g00003 K10666 - gmx:100817526 373.629