Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13961g00001 ATGAATAAAGAGTCACTTGATTACTGGAGGAATTACTTTGGAGCTGCGAACTCTGACATATTTGGCATCATTGACCATGCGATCATGGTAGCTGCTTCTGATTGCCCCAAGGAGTTCAGGTTGAGGAGAGATGGGATTGCAGAGAGGTTGTTCTCTTGCAGATTGAGTCAATGTTTGGGGTGTGAGAGGGTGGAGTTGGCTGTGCCAGTGGATAATGATGGTGGCGAAGGTGGTGGTGGTTGCAAGAGTGGCTTTGATGGGGATGGCACCAAGTTTGAGTTCGAAGCGGGTGCAAGTAAAGAGAGCAAGGTCAATAGTACTAGAAATGATCCTGGAGAGATGAACATGAACCAAGTTAGCAACTACAGCTATGGGGATGCTGAGGCATTGACTGATGAGATTGAAGAAGAGTCTCAATATGCTGAGGAGGTGTTCAGGATCAAGGATGTTTTGCTTAACTTTGAAGACGAGTCTGATTCAGTGTTGTTTGATTCATTGAGGAGGCTTCAGCTGATGGAACTCACAGTGGATCTTCTGAAGGCAACTGAGATTGGAAAGGCTGTCAATCCTCTTCGAAAGCATGCATCAAAGGACATTTGTCAACTTGCACGGACTCTTATCGATGGCTGGAAAGAAATGGTGGATGAGTGGGTCAAGGCTACCACAGCTATTACAGGTTCAGAAGGTACTCCTGATTCAGTAAATCCATCTGTTGTTGATGATGAAGAAGGGCTTCCATCACCTCCTATGGATGAAGGGGCTTTATTTGCAGCTCCAACTGGTTCAATGGAACTCTCACAGTTCTTTGATGGCATGGATGATGATGGAAATCCTCATCACAGTGGGGGATTTATCAAGAACCATGAACATGGAAGAATACCATCTCTGAACAGTCAAAATATAGCAAAGAGGAAACCTCAGGCTTCAAATGAGGCAAACATCATTGCCAAGGACAGTAAGAGTCAGCAAGCAAAGAAAAATGAGACTGCGGTGAGGCAAAACAAACCAGTAAACGCTGATTCTGGTCCCGGCAGACCACCAAATTCAACAATGCAGAAGAAAGGCAATATTGAGCTGAAGATACATCAGAATATAGTTAAGAATGCCATCCCAAAAAATCCTCACGTTGGTCAGCTAGATAAATTCAAGGGTTCAGACAACTCTGCAGTACACGTGAAGTTAGAAGCCACAAAGAGGAAACTTCAGGAGCGGTATCAACAAGTTGAAAATGCCAAGAGACAGCGGACGGTACAGGTTATGGAGTTGCATGACCTCCCAAAGCAAGGGAGTGGCCACCGAAATCCGCATGTCAAACCTGGGAATCACAAGAGGCAATGGGGTCATGAAGCACTTGAATTTAGTTCAGAAGACCACGCGCTGGGTGTCTGA 1389 0.4528 MNKESLDYWRNYFGAANSDIFGIIDHAIMVAASDCPKEFRLRRDGIAERLFSCRLSQCLGCERVELAVPVDNDGGEGGGGCKSGFDGDGTKFEFEAGASKESKVNSTRNDPGEMNMNQVSNYSYGDAEALTDEIEEESQYAEEVFRIKDVLLNFEDESDSVLFDSLRRLQLMELTVDLLKATEIGKAVNPLRKHASKDICQLARTLIDGWKEMVDEWVKATTAITGSEGTPDSVNPSVVDDEEGLPSPPMDEGALFAAPTGSMELSQFFDGMDDDGNPHHSGGFIKNHEHGRIPSLNSQNIAKRKPQASNEANIIAKDSKSQQAKKNETAVRQNKPVNADSGPGRPPNSTMQKKGNIELKIHQNIVKNAIPKNPHVGQLDKFKGSDNSAVHVKLEATKRKLQERYQQVENAKRQRTVQVMELHDLPKQGSGHRNPHVKPGNHKRQWGHEALEFSSEDHALGV 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13961g00001 462 ProSiteProfiles TFIIS N-terminal domain profile. 142 217 IPR017923 -
Mupr13961g00001 462 MobiDBLite consensus disorder prediction 224 256 - -
Mupr13961g00001 462 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 439 IPR044805 -
Mupr13961g00001 462 Pfam TFIIS helical bundle-like domain 166 214 IPR017923 -
Mupr13961g00001 462 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 139 228 IPR035441 -
Mupr13961g00001 462 MobiDBLite consensus disorder prediction 442 462 - -
Mupr13961g00001 462 MobiDBLite consensus disorder prediction 269 352 - -
Mupr13961g00001 462 MobiDBLite consensus disorder prediction 273 287 - -
Mupr13961g00001 462 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 132 226 IPR035441 -
Mupr13961g00001 462 Coils Coil 391 418 - -
Mupr13961g00001 462 SMART TFS2_5 141 216 IPR003617 GO:0005634
Mupr13961g00001 462 CDD TFIIS_I 141 215 - -
Mupr13961g00001 462 MobiDBLite consensus disorder prediction 292 336 - -
Mupr13961g00001 462 MobiDBLite consensus disorder prediction 426 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13961g00001 Mupr-Chr13961 4629 9860 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Mupr13961g00001 Med26 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13961g00001 - - gmx:100775579 801.971