Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13930g00004 ATGTCTACAGCAGTGGAACATGATTACATAGGCTTAGCAGAGGTTCCATCCATGGACAAAAGCTGCGACAAGATATCCTCTTCAGTTTCCTCCAACCTCTCCTCGGAGGATGAGAACACTTCATCTCTCAACTTCAAGGAGACAGAGCTGAGGCTTGGCCTGCCTGGTTCTGATTCTGCTGAGAACAACAAATCAATCTCTCTTTTTGGCAAGGATTTGCAGAACAAGCATAGTGCCTATTCTGCTTCTTCAACTCCTTCCAAGAACAACCTTAAGAGGGGCTTCTCTCATGCCATTAGCTCCTCTTCTTCTTCTTCTGCCAAATGGATTTTCTCAGTTAGTGATAATGCAACTGAGACTGATTTCGGAAATGCTTCTAATTCCTCTGCACGATGCATCAAAGAGGTTGCTATGCTTCCTCACTCTCACAACCTGGCTCAGGTTGCTGCAAAAAATGACCATGCTACTGCTCCTCCTGCTGCAAAAGCACAAGTTGTGGGATGGCCACCAATTCGATCTTTTCGTAAGAACACGATGGCCTATAATTTGGCAAAAATCAACAACGAAGCTGAAGAGAAATCAGGAGTTGGTTGTCTTTATGTAAAAGTCAGCATGGATGGTGCTCCTTATCTCAGAAAGGTTGATCTGAAAACCTACAGCAACTATATTCAACTTTCTTCAGCTCTTGAGAAAATGTTCAGATGCTTTACCATTGGTCAATGCAATTCTCGTGCATTTCCTGGGAAAGACGGATTAAGCGAGAGCGCTTTCAGGGATCTTGTTGATGGCTCTGAATATGTTCTTACATATGAAGATAAGGATGGAGACTGGATGCTTGTGGGTGATGTCCCTTGGAAGATGTTCACTGAGTCATGTAAGAAACTGAGGATAATGAAAGGCTCTGAGGCAATCGGACTAGCTCCAAGGGCCATGGACAAGTCTAGGAGCCAAAATTAG 957 0.4399 MSTAVEHDYIGLAEVPSMDKSCDKISSSVSSNLSSEDENTSSLNFKETELRLGLPGSDSAENNKSISLFGKDLQNKHSAYSASSTPSKNNLKRGFSHAISSSSSSSAKWIFSVSDNATETDFGNASNSSARCIKEVAMLPHSHNLAQVAAKNDHATAPPAAKAQVVGWPPIRSFRKNTMAYNLAKINNEAEEKSGVGCLYVKVSMDGAPYLRKVDLKTYSNYIQLSSALEKMFRCFTIGQCNSRAFPGKDGLSESAFRDLVDGSEYVLTYEDKDGDWMLVGDVPWKMFTESCKKLRIMKGSEAIGLAPRAMDKSRSQN 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13930g00004 318 FunFam Auxin-responsive protein 193 310 - -
Mupr13930g00004 318 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 42 305 IPR003311 GO:0005634|GO:0006355
Mupr13930g00004 318 ProSiteProfiles PB1 domain profile. 198 300 IPR000270 GO:0005515
Mupr13930g00004 318 MobiDBLite consensus disorder prediction 21 46 - -
Mupr13930g00004 318 Pfam AUX/IAA family 47 309 IPR033389 -
Mupr13930g00004 318 Gene3D - 192 312 - -
Mupr13930g00004 318 SUPERFAMILY CAD & PB1 domains 198 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13930g00004 Mupr-Chr13930 19773 22302 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13930g00004 202 308 B3 DNA Binding Superfamily AT4G23980 29.907 1.10e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mupr13930g00004 AUX_IAA 1.7e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13930g00004 K14484 - gmx:100804782 493.426