Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1392g00001 ATGGATTCGGAAGAAGATGAACGAAGCTGTGAGACGTCAGCGCCGGACAAATACCTGTTGGGCTTCGTGATGGCCAACATCGTGGGCCTGCAACACCACTGCGGCACCATCCTCGGGCGCGCTCTGGTGGGCCTTGTCCGCGAGCCCCACAACCCACACGACCCTAACGCCATCCAAGTCTTCAACACCCACTCCCTTCCCGTCGGCTACATCGAACGCTCCGTCGCCGCCGCCTTATCCCCCCTCATCGACGCCGACCTCATCACCGTCGAGGCCATTGTCCCCAACGCCCGCAAAACCCACCGTATCCCCTGCCAAATTCACATCTTCGCTCGCTTCCAAGACTTTAACGCCGTCAAAGACTCCGGCCTCAAAATCATTACCGAATCCGACGCCGCCTTCACCCTCTCCGACGCCGTCGCCGTCAAAGAGACCAGAGCCCAGAAGAAGTCTACCTCCGTCGACACCATTTTCAGAAACGTCGACCATGACCTCGCCAGGAAGAACCGTGTCATCCAAACCTTGGAGCCTCCGAAGAGCATAATCAAATCGGAGCTTCTCCCGCACCAGAAAGAGGCTCTCGCGTGGCTCGTTCACCGCGAAAATTCTGACGAGTTGCCGCCGTTTTGGGAAGAAAACGACGGCAAGTTCGTAAATATCTTAACCAATTATCAAACCGACGAAAGACCCAACCCTCTTAGAGGTGGCATTCTGGCCGACGAAATGGGGTTGGGAAAGACCTTAACTTTGCTTTCTTTGATCGCTTTTGACAAAAAGAGCCAAATGGGTGTCTCCAAGAAATGGAGAACGGACAGGAAGGCCATTACTTTTGAGAGACCGCGTAAGAAAGAAGGGGAGAGCACCTTTGCGGGAATGAGAACAAACGCAACGTTGGTGGTGTGTCCTCCTTCTGTTATATCCACGTGGATAACACAGTTGGAGGAACACACTGTGCCCGGTGCATTGAAGACTTACATGTATTATGGGGATAGAAGGACCGAGAATGCTGAGGAGCTTAAGATGTATGATTTGGTGTTGACTACTTACTCTACTTTGTGTAATGAACAGCCCATTCCGGATTTGCCGGCAAAGAAAATGGAGTGGCGGAGAATTGTGTTGGATGAGGCACACGCCATAAAGAATATCAAGGCTCAACAGAGCGAGGCCGTTTGCCGGTTCCATGCTCAGTACAGGTGGGCCGTCACAGGGACACCCGTTCAAAGTGGTTGTATCGATTTGTTTTCTATCATGGTCTTTCTGCGGTTCGAACCCTTTTCGGTTAGAAGTTATTGGAGAGAATTGGTGCAACGCCCTCTTAATAAGGGCACCAGCAGTGGGGTCCAACGTTTGCAGGTTTTGATGGATGCAATTGCTTTGCGAAGAACAAAAGATGTGGCATTGGTGGGGCTGCCACCAAAAACCACAGAGACTTGTTATGTTGAGCTTTCTTTGGAAGAACGGGAACTGTATGATCAGGTGAAAGCGCAAACAAAGACACTGTTGAATAGTTTTAACCATGAGGACAATATTATGGTGCCCTGTTATCCTGCTGTACTAAGTAGGATTCTAAGACTTCGCCAAATTTGTACTGATTTGAAATTGTGTGAAGATCAGTCATTACTCCTTACAAATATTGAAGATGTTTCCAATAACCCTGAATTGAAGCAAACATTACTTGAGTTGCTGGAAGATGAAGAAGAGTTTGACTGTCCAGTTTGTTTATCTCCTCCAACGGACATTGTGATCACACGATGTACTCACATTTTCTGCCGAGAGTGTATTCTGAGAGCTTTAAAAAACAGCAATTCCCGTTGTCCTCTTTGCCGGCACACCCTCTCAGAATCAGACTTGTTCTCGGCCCCTTCAGAGTCTAGCAAGGCAGAGAAGGACGAAGCATGCTCATCAACAGAAACGGGCTTATCTTCAAAAGCATGTACTCTGATGAAACTCCTTATAGAATCAAGGAATCAAAATCCAGCTACAAAGTCAGTTGTGTTTTCACAATTTAGAAAAGTGCTGGTGTTACTGGAAGGGCCACTGAATGCAGCGGGTTTCAAGACATTGCGGCTGGATGGGACGATGAATGCAAGACAGAGGGCGAAAGTGATAGAACAGTTTCAAGACCAAGGAAGAGAAGGGGCGACGGTTCTGCTTGCAAGCATCAGGGCTTCAAGTGCAGGCATAAATCTCACATCTGCTTCTAGGCTGTACTTCATGGAGCCATGGTGGAACCATGCAGTTGAGGAACAGGCAATGGATCGCGTCCACCGCATTGGACAGAAAGAAGCTGTCAAGGTTGTCAGATTGATAGCTCGAAACAGTATTGAAGAGAAAATATTGATCTTGCAGGAGAAGAAGAAACAACTGTGCGCGGAACCCGGAACCAGATTATATGGCAGGGGCATGCAAGATATACGTTTCCTTTTAGATGACTAA 2436 0.4852 MDSEEDERSCETSAPDKYLLGFVMANIVGLQHHCGTILGRALVGLVREPHNPHDPNAIQVFNTHSLPVGYIERSVAAALSPLIDADLITVEAIVPNARKTHRIPCQIHIFARFQDFNAVKDSGLKIITESDAAFTLSDAVAVKETRAQKKSTSVDTIFRNVDHDLARKNRVIQTLEPPKSIIKSELLPHQKEALAWLVHRENSDELPPFWEENDGKFVNILTNYQTDERPNPLRGGILADEMGLGKTLTLLSLIAFDKKSQMGVSKKWRTDRKAITFERPRKKEGESTFAGMRTNATLVVCPPSVISTWITQLEEHTVPGALKTYMYYGDRRTENAEELKMYDLVLTTYSTLCNEQPIPDLPAKKMEWRRIVLDEAHAIKNIKAQQSEAVCRFHAQYRWAVTGTPVQSGCIDLFSIMVFLRFEPFSVRSYWRELVQRPLNKGTSSGVQRLQVLMDAIALRRTKDVALVGLPPKTTETCYVELSLEERELYDQVKAQTKTLLNSFNHEDNIMVPCYPAVLSRILRLRQICTDLKLCEDQSLLLTNIEDVSNNPELKQTLLELLEDEEEFDCPVCLSPPTDIVITRCTHIFCRECILRALKNSNSRCPLCRHTLSESDLFSAPSESSKAEKDEACSSTETGLSSKACTLMKLLIESRNQNPATKSVVFSQFRKVLVLLEGPLNAAGFKTLRLDGTMNARQRAKVIEQFQDQGREGATVLLASIRASSAGINLTSASRLYFMEPWWNHAVEEQAMDRVHRIGQKEAVKVVRLIARNSIEEKILILQEKKKQLCAEPGTRLYGRGMQDIRFLLDD 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1392g00001 811 Pfam Helicase conserved C-terminal domain 647 759 IPR001650 -
Mupr1392g00001 811 Gene3D - 221 462 IPR038718 -
Mupr1392g00001 811 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 563 620 IPR013083 -
Mupr1392g00001 811 SMART ring_2 570 608 IPR001841 -
Mupr1392g00001 811 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 646 811 IPR001650 -
Mupr1392g00001 811 Gene3D - 11 126 - -
Mupr1392g00001 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 462 789 IPR027417 -
Mupr1392g00001 811 ProSitePatterns Zinc finger RING-type signature. 585 594 IPR017907 -
Mupr1392g00001 811 SMART ultradead3 182 435 IPR014001 -
Mupr1392g00001 811 Coils Coil 772 792 - -
Mupr1392g00001 811 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 140 808 - -
Mupr1392g00001 811 SMART helicmild6 674 759 IPR001650 -
Mupr1392g00001 811 CDD SF2_C_SNF 636 770 - -
Mupr1392g00001 811 ProSiteProfiles Zinc finger RING-type profile. 570 609 IPR001841 -
Mupr1392g00001 811 Gene3D - 471 795 IPR027417 -
Mupr1392g00001 811 Pfam HIRAN domain 21 110 IPR014905 GO:0003676|GO:0008270|GO:0016818
Mupr1392g00001 811 SMART HIRAN_2 20 113 IPR014905 GO:0003676|GO:0008270|GO:0016818
Mupr1392g00001 811 SUPERFAMILY RING/U-box 565 618 - -
Mupr1392g00001 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 461 IPR027417 -
Mupr1392g00001 811 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 227 423 IPR014001 -
Mupr1392g00001 811 Pfam Zinc finger, C3HC4 type (RING finger) 570 608 - -
Mupr1392g00001 811 Pfam SNF2-related domain 189 533 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1392g00001 Mupr-Chr1392 1220 5281 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1392g00001 4 796 RAD5 or RAD16-like Gene Family AT5G05130 54.324 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr1392g00001 SNF2_N 3.3e-73 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1392g00001 K15711 - gmx:100791783 1169.45