Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13863g00002 ATGGGCTTTTGGGATAGTAATAGGAAGAGAAGCCCAATGAAAACAGAAGCAGATGTCGAGGTGGATGTTGCGGCAGGACAGCCGAAGAAGAGAACTTTCAAAAAGTTCAGCTTCAGGGGCGTGGATCTGGACGCGCTTCTCGACATGTCCACCGATGAGCTCGTGAAGATGTTTAGTGCACGCGCTCGTAGAAGGTTCCAGAGAGGCCTCACCAGAAAGCCCATGGCCTTGATTAAGAAGCTCCGCAAAGCGAAAAGGGAAGCACCAGCAGGTGAGAAGCCAGAACCAGTCCGCACCCACCTTCGGAACATGATTATTGTTCCTGAGATGATTGGAAGCATAATTGGTGTGTACAATGGGAAGACCTTCAACCAGGTCGAAATCAAACCCGAGATGATTGGACATTATCTCGCTGAGTTTTCAATTTCGTATAAACCAGTTAAGCATGGTAGACCTGGTATTGGTGCAACTCACTCCTCCAGGTTCATTCCTCTTAAGTGA 501 0.483 MGFWDSNRKRSPMKTEADVEVDVAAGQPKKRTFKKFSFRGVDLDALLDMSTDELVKMFSARARRRFQRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13863g00002 166 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 24 166 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mupr13863g00002 166 NCBIfam 30S ribosomal protein S19 33 166 IPR005713 GO:0003735|GO:0006412|GO:0015935
Mupr13863g00002 166 Pfam Ribosomal protein S19 64 149 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mupr13863g00002 166 SUPERFAMILY Ribosomal protein S19 69 150 IPR023575 GO:0003735|GO:0005840|GO:0006412
Mupr13863g00002 166 ProSitePatterns Ribosomal protein S19 signature. 119 143 IPR020934 GO:0003723
Mupr13863g00002 166 PRINTS Ribosomal protein S19 family signature 99 118 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mupr13863g00002 166 PRINTS Ribosomal protein S19 family signature 119 131 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mupr13863g00002 166 PRINTS Ribosomal protein S19 family signature 131 146 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mupr13863g00002 166 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 23 166 IPR002222 GO:0003735|GO:0005840|GO:0006412
Mupr13863g00002 166 FunFam 40S ribosomal protein S15 23 166 - -
Mupr13863g00002 166 Gene3D 30s Ribosomal Protein S19; Chain A 23 166 IPR023575 GO:0003735|GO:0005840|GO:0006412
Mupr13863g00002 166 Hamap 30S ribosomal protein S19 [rpsS]. 62 155 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13863g00002 Mupr-Chr13863 2892 3893 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13863g00002 17 166 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 88.667 5.56e-93 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13863g00002 K02958 - gmx:100801408 292.352