Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13800g00002 ATGGGCAGGGCTCCTTGCTGCGACAAAGCAAACGTGAAGAAAGGTCCATGGTCACCAGAAGAAGATGCTAAGCTCAAGTCCTACATAGAAAAAAACGGCACCGGCGGTAACTGGATTGCTTTGCCTCAAAAAATAGGCCTCAAGCGTTGTGGCAAGAGTTGCCGCCTTAGGTGGCTAAACTATCTTCGCCCTAATCTCAGGCACGGTGGTTTCTCAGAAGAAGAAGACAACATTATTTGCAGCCTCTACGTCAGCATTGGAAGCAGGTGGTCGGTGATTGCAGCTCAATTGCCAGGGAGAACGGACAATGACATAAAGAACTACTGGAACACGAGGCTGAAAAAGAAGCTTCTAGGGAAGCACCGAAGAGAGCCACGTAATAGAGGCAATTACAACAGTGTTAAGCAAGAAAGTGATGTTAATAGAGGGAGCAGTGATGGCGATTCTTCTTCCTTATCCTTGGTCCATGAAAATAATAGCACTACTCAACAACAACCATGTTGGCCACAGAATATTAACATGCCTGTTCTACCACTACAAGTACCCTTGTACACAAACCAAGGTCCATCTTTCAACGACCAAGATTCCATCAAAAAGCTCCTTATCAAACTGGGAGGGAGATTTTCAGGTGATTATTACCATCCTGCCCTTGATGGGATGAATCTTCAATTCTCAGATGGGCAACAAGTTTATCAAGAACAAGTCCATGTTGGCTCTTCTTCTTCTGCTTGCATTGCCAACAATGAGGTACAATTTGCACAAACTGGTCAATACTCTGCAGTTGATAACTTGATGCAAGGACAAGGTAGTAATTTCACGCCATCATTTGAGGAAATGGTGCCTTCTTCTAATTATGAAGACGGGTTGGAGTTCTTGTATGGTGAGGGCATGATCAACCATAAGATAATAGACTCTACTACTACTTGTGGCCAAAGAACTACTTCCACAAACTGGGGTGAAACTAACACTCCCATTTATCACCATCATTCCCTTGCTTCCAATTACCAAGGTCAAGGTGTGGGGCAAGAATGTGCTTTGCAAGAGTTTAGCTACCCCAGAGTAGCCCAATAA 1071 0.4426 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEKNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNLRHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRREPRNRGNYNSVKQESDVNRGSSDGDSSSLSLVHENNSTTQQQPCWPQNINMPVLPLQVPLYTNQGPSFNDQDSIKKLLIKLGGRFSGDYYHPALDGMNLQFSDGQQVYQEQVHVGSSSSACIANNEVQFAQTGQYSAVDNLMQGQGSNFTPSFEEMVPSSNYEDGLEFLYGEGMINHKIIDSTTTCGQRTTSTNWGETNTPIYHHHSLASNYQGQGVGQECALQEFSYPRVAQ 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13800g00002 356 Gene3D - 70 142 - -
Mupr13800g00002 356 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Mupr13800g00002 356 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Mupr13800g00002 356 CDD SANT 71 113 IPR001005 -
Mupr13800g00002 356 FunFam Transcription factor RAX3 7 68 - -
Mupr13800g00002 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Mupr13800g00002 356 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Mupr13800g00002 356 PANTHER OS09G0431300 PROTEIN 1 270 - -
Mupr13800g00002 356 MobiDBLite consensus disorder prediction 131 169 - -
Mupr13800g00002 356 CDD SANT 16 62 IPR001005 -
Mupr13800g00002 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Mupr13800g00002 356 MobiDBLite consensus disorder prediction 119 169 - -
Mupr13800g00002 356 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mupr13800g00002 356 FunFam Transcription factor MYB36 70 141 - -
Mupr13800g00002 356 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Mupr13800g00002 356 SMART sant 13 64 IPR001005 -
Mupr13800g00002 356 SMART sant 67 115 IPR001005 -
Mupr13800g00002 356 Gene3D - 7 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13800g00002 Mupr-Chr13800 18513 20355 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13800g00002 1 203 MYB Transcription Factor Family AT3G49690 62.621 8.11e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mupr13800g00002 Myb_DNA-binding 2.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13800g00002 K09422 - gmx:100800290 613.609