Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13760g00002 ATGCTAACCACAATCCTCAGAAGAACTTGTTCCACCCTGTCGAGGCGCGTTTTCCCCGCTGCCATAATCTGCGCCTCCGCCAGCCACGACTTCCGGCCACTCTCCGCCACCTTTAATTCCAGAACCTTCCACTCGAAACCCGGGCCGTTAAATTTCCGCTCATCTTCATGTCACCGTGCGGAATACGCCGTAGACGACATCCCTTACGAGGAAGGGACGAGAGGGAACGCCGACGAAGGCCTCGAGATTGCGAAGCTCGGCATTTCGCAGGATATTGTCTCTGCTTTGGCCAAGAAAGGCATCACCAAGCTCTTCCCCATTCAGAGGGCTGTGCTAGAACCTGCTATGCAAGGTCGTGATATGATTGGTCGAGCTAGAACTGGAACTGGGAAAACCCTTGCTTTTGGGATACCCATCATGGATAAAATCATTCAGTTTAATGCTAAGCATGGGCGGGGAAGGGATCCTTTGGCTTTGGTTTTGGCTCCAACCAGAGAGCTTGCACGTCAGGTTGAAAAGGAGTTCTATGAATCGGCACCTAACTTGGATACTATTTGTGTTTATGGGGGTACACCCATCTCTCGGCAGATGAGTCAGCTTGATTATGGTGTGGATATTGCCGTGGGAACGCCTGGTCGGATAATTGACCTTCTCAACAGAGGTGCTCTAAATTTGAAGGATGTTAAATTCGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTGGGCTTTCAGGAAGACGTGGAGAAGATCCTTGAGAGGTTGCCCCCAAAACGTCAGACTCTTATGTTCTCTGCAACAATGCCGTCATGGATAAAGCAGATTACGCGCAATTACCTGAAAGATCCGGTGACCATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCACTGTACTCCATTGCAACTGATATGTATGTTAAAGCAGGAATTCTTGCACCTCTAATAACAGAACATGCAAAAGGAGGAAAGTGTATTGTTTTCACTCAAACAAAACGTGATGCTGATCGATTATCATATACCATGGCAAAAAGTGTTCAATGTGAGGCTTTGCATGGAGACATATCACAAGCTCAGAGGGAAAGAACTCTTGCTGGCTTCAGAAATGGTCATTTTAATGTTTTAGTAGCAACTGATGTTGCCTCACGTGGACTTGATATACCTAATGTTGATCTTGTAATACATTATGATCTTCCCAATAATTCAGAGATATTTGTTCATCGATCTGGACGAACAGGTCGTGCTGGAAAGAAAGGAAGTGCTATTCTTGTGTATACAGAAGATCAATCAAGGGCTGTTAGACTTATTGAGCGTGATGTGGGCTGTAGATTTACAGAGCTACCACGGATTGCCGTTGATAGTGCATCAGTGGACACATTTGGTGGCATGGGTGGTGGGCGATTTGGTTCTTTTGGAGGTACCAGGGATCGCGGATATAGTGATTCAGGTTTTGGCCGTGGTCCTGGATCTGGCCGTTCTGGGGGCTACAGTAACAGTGGATCTGGCCGCTCTAGCTTTGGAAATTCTGGTGAAAGGTTTGGTGGACAGAATTATAATCGTTCTGGTTTTGGTAATTCATCTGGTGAAATGAGTAGATATGGTGGACCAAGCTCTGGTCGTTTTGGCTCATCTGGTGGCTTTGGTTCAGGTCAATCAGGAAGTAGATCTGGTGGATCATCCAGTGGGTTTAAGTTTAGTCGTTCAGATGATTTTGGGGGTTCAGATCGTTCGGGTGGTTTTGGAAATCGTGGCTCAGGTCAGCCAAGTGGCTTTGGTGATTCTCGTGGTAGTAGTCACAACAATAGAAGACCTTTTTAA 1830 0.4628 MLTTILRRTCSTLSRRVFPAAIICASASHDFRPLSATFNSRTFHSKPGPLNFRSSSCHRAEYAVDDIPYEEGTRGNADEGLEIAKLGISQDIVSALAKKGITKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPIMDKIIQFNAKHGRGRDPLALVLAPTRELARQVEKEFYESAPNLDTICVYGGTPISRQMSQLDYGVDIAVGTPGRIIDLLNRGALNLKDVKFVVLDEADQMLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIKQITRNYLKDPVTIDLVGDSDQKLADGISLYSIATDMYVKAGILAPLITEHAKGGKCIVFTQTKRDADRLSYTMAKSVQCEALHGDISQAQRERTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYDLPNNSEIFVHRSGRTGRAGKKGSAILVYTEDQSRAVRLIERDVGCRFTELPRIAVDSASVDTFGGMGGGRFGSFGGTRDRGYSDSGFGRGPGSGRSGGYSNSGSGRSSFGNSGERFGGQNYNRSGFGNSSGEMSRYGGPSSGRFGSSGGFGSGQSGSRSGGSSSGFKFSRSDDFGGSDRSGGFGNRGSGQPSGFGDSRGSSHNNRRPF 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13760g00002 609 MobiDBLite consensus disorder prediction 546 571 - -
Mupr13760g00002 609 MobiDBLite consensus disorder prediction 496 537 - -
Mupr13760g00002 609 MobiDBLite consensus disorder prediction 584 603 - -
Mupr13760g00002 609 Gene3D - 305 461 IPR027417 -
Mupr13760g00002 609 SMART ultradead3 100 303 IPR014001 -
Mupr13760g00002 609 CDD DEADc 92 287 - -
Mupr13760g00002 609 Gene3D - 82 290 IPR027417 -
Mupr13760g00002 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 441 IPR027417 -
Mupr13760g00002 609 Pfam Helicase conserved C-terminal domain 315 420 IPR001650 -
Mupr13760g00002 609 SMART helicmild6 340 420 IPR001650 -
Mupr13760g00002 609 Pfam DEAD/DEAH box helicase 105 274 IPR011545 GO:0003676|GO:0005524
Mupr13760g00002 609 CDD SF2_C_DEAD 312 429 - -
Mupr13760g00002 609 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 112 286 IPR014001 -
Mupr13760g00002 609 MobiDBLite consensus disorder prediction 483 609 - -
Mupr13760g00002 609 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 315 459 IPR001650 -
Mupr13760g00002 609 FunFam Nucleolar RNA helicase II 308 464 - -
Mupr13760g00002 609 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 82 460 - -
Mupr13760g00002 609 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 81 109 IPR014014 GO:0003724
Mupr13760g00002 609 FunFam ATP-dependent RNA helicase RhlE 73 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13760g00002 Mupr-Chr13760 7465 11802 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13760g00002 86 452 Eukaryotic Initiation Factors Gene Family AT3G19760 34.232 5.86e-68 225