Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13759g00004 ATGGTGAAGGTGTGGCGTGTGGAGCCACGGACATTGAAACTGTGGGATCTTATTGTATTGACAAAATTTCATTTATGGAGGATGGATTATCTACTAGCAGACACTTACAATTCATACATATTCAGGCACTCTTCAGGAACACAGCAAGATAAAAGAGAAATGGCCTTAAACCAGTATTTTGAGTCTGTGCCACAATTATCTTCCTTTGAAGATAACATGGAAACATGGAAATGTACCAGTGATGATACTGCAGATTCTGGTAGAAACGCCTCTACCGGCTTTGATTGCAACATCTGCCTTGAGTGTGTGCAAGATCCAGTGGTCACTCTCTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTTAATTTCCATAGTGCCTCTTCTGAAGAGAAGGAGAAGCAACAATGTCCAGTATGCAAATCAGAAATATCACAGTCATCCCTTGTTCCACTATATGGCCGCGGCCAAACCGCTCTACCTTCTACCAAAGGTCACCAAGTAGGGATTGGCATACCAAGAAGACCACTTGGTCCTTCTTGGGTGGCTAACTCACCAAGATCACTTGATTCTACAGCTGTTTCCCAACCTACTTCTCGTGTTTATCATCGCCATTACCACAACCATCCTCAACGATTCAACTCAATTTCAGGCAGTTACACTTCACCAATGTTCAACACAGATGGTTCACTAGCAAATGCATTTGATACAACATATGGAGTCTTTGGTGAGATGATATATGCAAGGGTCTTTGGAAATCAGCTTACTAATGCATACTCATACCCCAATTCATATGACCCTTCAGGGAACGATAATCCAAGGATCAGAAGGCATTTGATGCAAGAAGTTCGGAGTCTAAATAAGCCTCTTCAAACGCTTCTTCATCTTGCTTTTGCTGCATATGAATAA 915 0.423 MVKVWRVEPRTLKLWDLIVLTKFHLWRMDYLLADTYNSYIFRHSSGTQQDKREMALNQYFESVPQLSSFEDNMETWKCTSDDTADSGRNASTGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLNFHSASSEEKEKQQCPVCKSEISQSSLVPLYGRGQTALPSTKGHQVGIGIPRRPLGPSWVANSPRSLDSTAVSQPTSRVYHRHYHNHPQRFNSISGSYTSPMFNTDGSLANAFDTTYGVFGEMIYARVFGNQLTNAYSYPNSYDPSGNDNPRIRRHLMQEVRSLNKPLQTLLHLAFAAYE 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13759g00004 304 ProSitePatterns Zinc finger RING-type signature. 111 120 IPR017907 -
Mupr13759g00004 304 SMART ring_2 96 142 IPR001841 -
Mupr13759g00004 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 62 295 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mupr13759g00004 304 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 79 156 - -
Mupr13759g00004 304 Pfam Zinc finger, C3HC4 type (RING finger) 96 142 IPR018957 GO:0046872
Mupr13759g00004 304 ProSiteProfiles Zinc finger RING-type profile. 96 143 IPR001841 -
Mupr13759g00004 304 CDD RING-HC_AtRMA-like 94 144 - -
Mupr13759g00004 304 SUPERFAMILY RING/U-box 95 149 - -
Mupr13759g00004 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 159 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13759g00004 Mupr-Chr13759 22741 26196 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13759g00004 89 290 C3H Transcription Factor Family AT4G27470 39.535 1.99e-39 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13759g00004 K10666 - gmx:100785491 377.867