Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13751g00001 ATGCAACAGAGGCTCAAGTTGCAGCAACAACAAGCCCTCATGCAGCAAGCCTTGCTTCAGCAACAGCAGATGTACCACCCTGGTATGCTCGCCGCTGCCATGTCTCAGATGGAGCCTGTTCCAAGTGGAAATTTGCCTCCCGGTTTTGATACTTCTGCATGCCGTAGTGTTTATGTAGGAAATATTCATGTAAACGTCACCGATAAACTTCTTGCAGAAGTTTTTCAGAGTGCTGGTCCTCTTGCTGGCTGCAAGCTCATAAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTACCATGATCGAGCATCTGCAGCCCTTGCTATAATGACATTGCATGGACGGCAACTGTATGGTCAAGCACTTAAGGTGAATTGGGCATATGCCAATAGCAGTAGGGAGGATACGTCAGGGCACTTCAATATATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCTTGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAGGGTTATGTGGGATCACAAAACTGGTCGGTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCCCAAAGTGCAATAAATGATATGACAGGTAAGTGGCTGGGAAATAGGCAAATAAGATGCAACTGGGCAACTAAGGGTGCTGGTGGCAGCTCCAATGAAGAGAAGAACAATGACAGCCAAAATGCTGTTGTGCTTACAAATGGATCTTCAGATGGAGGTCAAGATAATAACAATGAGGATGCTCCCGAAAACAATCCTTCATACACCACAGTTTACGTTGGCAACCTTCCTCATGATGTAACACAAGCTGAACTCCATTGTCAGTTCCACGCACTAGGGGCAGGGGTAATTGAGGAGGTCCGAGTTCAGAGGGATAAGGGTTTTGGATTTGTCAGGTACAACACTCATGAGGAAGCTGCATTGGCCATTCAGATGGCTAATGGAAGAATAATTCGTGGGAAGACTATGAAGTGTTCATGGGGTAGTAAACCAACTCCTCCTGGAACAGCTTCAAATCCACTACCACCTCCTGCTGCTCAACCATATCAAATACTTCCTACTGCAGGGATGAACCAAGGGTATTCTCCTGCTGAGTTGTTGGCTTATCAGCGCCAACTGGCCTTGAGTCAGGCTGCTGTATCTGGTCTTTCTGGTCAAGCTCTTCTGCAAATGACTGGACAACATGGCCTAGCTCCTGCTTCAATGGGCGTAAACTCTGGGGGATCTCAAGCCATGTATGATGGATATACCGGTAATTCATCAAGACAGCAACTTATGTACTATCGTTGA 1308 0.4564 MQQRLKLQQQQALMQQALLQQQQMYHPGMLAAAMSQMEPVPSGNLPPGFDTSACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKNNDSQNAVVLTNGSSDGGQDNNNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVIEEVRVQRDKGFGFVRYNTHEEAALAIQMANGRIIRGKTMKCSWGSKPTPPGTASNPLPPPAAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMTGQHGLAPASMGVNSGGSQAMYDGYTGNSSRQQLMYYR 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13751g00001 435 Gene3D - 240 340 IPR012677 -
Mupr13751g00001 435 SMART rrm1_1 141 214 IPR000504 GO:0003723
Mupr13751g00001 435 SMART rrm1_1 56 125 IPR000504 GO:0003723
Mupr13751g00001 435 SMART rrm1_1 263 332 IPR000504 GO:0003723
Mupr13751g00001 435 Gene3D - 1 137 IPR012677 -
Mupr13751g00001 435 MobiDBLite consensus disorder prediction 217 262 - -
Mupr13751g00001 435 FunFam Nucleolysin TIAR-like protein 1 138 - -
Mupr13751g00001 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 336 IPR000504 GO:0003723
Mupr13751g00001 435 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 44 339 - -
Mupr13751g00001 435 SUPERFAMILY RNA-binding domain, RBD 134 243 IPR035979 GO:0003676
Mupr13751g00001 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Mupr13751g00001 435 FunFam Oligouridylate-binding protein 1C 239 340 - -
Mupr13751g00001 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
Mupr13751g00001 435 Gene3D - 138 238 IPR012677 -
Mupr13751g00001 435 SUPERFAMILY RNA-binding domain, RBD 251 343 IPR035979 GO:0003676
Mupr13751g00001 435 CDD RRM2_PUB1 139 218 - -
Mupr13751g00001 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Mupr13751g00001 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Mupr13751g00001 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 330 IPR000504 GO:0003723
Mupr13751g00001 435 SUPERFAMILY RNA-binding domain, RBD 40 133 IPR035979 GO:0003676
Mupr13751g00001 435 FunFam Nucleolysin TIAR-like protein 139 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13751g00001 Mupr-Chr13751 3710 10814 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13751g00001 56 336 Eukaryotic Initiation Factors Gene Family AT2G23350 28.767 6.33e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13751g00001 K13201 - gmx:100777108 828.165