Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13668g00001 ATGCAATCAGATAATGGCAAGTTATTTATTGGTGGAATATCATGGGACACGAATGAAGAGCGACTCAGGGAGTATTTTAGTACTTATGGGGAGGTTGTGGAAGCAGTGATAATGAAGGATCGGACAACAGGTAGAGCCAGAGGATTTGGTTTTGTCGTTTTTTCCGATCCAGCAGTTGCAGAAATAGTTATAAAAGAGAAGCACAACATTGACGGAAGAATGGTTGAGGCGAAGAAAGCTGTTCCTAGGGATGATCAGAACATACTGACTAGAACCAGTGGCAGCATCCATGGTTCTCCTGGTCCAGGTCGCACTAGAAAGATATTTGTTGGGGGTTTAGCATCAACAGTGACAGAGAGTGATTTCAAGAAGTACTTTGATCAGTTTGGGACTATAACAGATGTTGTAGTTATGTATGATCACAACACTCAGAGGCCAAGAGGTTTTGGATTTATCACTTATGATTCTGAGGAGGCAGTTGACAAGGTCTTACTTAAGACGTTTCATGAATTGAATGGTAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAGTTATCGCCAGGACCAAGCCGTACCCCACTTGGATATAACTTTGGTCTTAGTAGTAGGGTCAATAGTTTCTTAAATGGCTTCACTCAGGGCTATCCTCCAAGTACTGTTGGAGGCTATGGACTTCGAGCGGATGGCAGATTCAGTCCAGTTGCCAGTGGTCGAAGTGGATTTGCTCCATTTGGATCAGGTTATGGAATGAGCATGAATTTTGAGCCTGGTTTGAATGCTGGATTTGGGGGGAATGCAAATTTCAATAGCAATCTTAGCTATGGTCGGGGAGTAAATCCTTATTATATTGGCAGCTCCAATAGGTTTGGTAGTCCTGTTGGATATGACAATGGCAATGGAGGAAACAATTCTTTCTTCAGTTCTGTGACTCGAAATTTGTGGGGTAATGGTGGCCTTAGTTATGGAACAAGTTCTGCAAATTCCAATGCATACATTGGATCAGGGAGTGGGAGTGTTGGAGGGAATACATTTGGCAATACTGGAGTCAACTGGGGTTCTTCAGCTATTTCTGGCCAAGGAGGAGGGAACAATATGTCACAAAGTAGTGGCAACCTGGGATATGGAGGTGGTGACAACAATTATGGTTTGGGAACTGGAGGGTATGGAAGAAGCACTGGTACCACTTTTGCACCAACATCTTCATACTCTGCATCAAATGGTGGTGTTGATGGGGCTTTTGCAGATTTTTACAATAATAGTTCAGTTTATGGGGACCCCACTTGGCGATCTTCAAATTCTGAGAGAGATGGATCTGGTCCCTTTGGTTATGGACTTGGTGGTGCAGCTTCAGATGTTTCAGCCAAGAGTTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAGAGGCAGCCAAATAGGGGTGAAGATAATCCAGCGAAGCAGATTGTATCCGAGCTTTGTGTA 1467 0.4356 MQSDNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAEIVIKEKHNIDGRMVEAKKAVPRDDQNILTRTSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRTPLGYNFGLSSRVNSFLNGFTQGYPPSTVGGYGLRADGRFSPVASGRSGFAPFGSGYGMSMNFEPGLNAGFGGNANFNSNLSYGRGVNPYYIGSSNRFGSPVGYDNGNGGNNSFFSSVTRNLWGNGGLSYGTSSANSNAYIGSGSGSVGGNTFGNTGVNWGSSAISGQGGGNNMSQSSGNLGYGGGDNNYGLGTGGYGRSTGTTFAPTSSYSASNGGVDGAFADFYNNSSVYGDPTWRSSNSERDGSGPFGYGLGGAASDVSAKSSPGYVGGYTVNKRQPNRGEDNPAKQIVSELCV 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13668g00001 489 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Mupr13668g00001 489 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Mupr13668g00001 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Mupr13668g00001 489 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Mupr13668g00001 489 MobiDBLite consensus disorder prediction 446 489 - -
Mupr13668g00001 489 SUPERFAMILY RNA-binding domain, RBD 3 105 IPR035979 GO:0003676
Mupr13668g00001 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Mupr13668g00001 489 Gene3D - 4 88 IPR012677 -
Mupr13668g00001 489 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
Mupr13668g00001 489 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 474 - -
Mupr13668g00001 489 CDD RRM2_Hrp1p 107 184 - -
Mupr13668g00001 489 SMART rrm1_1 7 78 IPR000504 GO:0003723
Mupr13668g00001 489 SMART rrm1_1 107 179 IPR000504 GO:0003723
Mupr13668g00001 489 Gene3D - 103 189 IPR012677 -
Mupr13668g00001 489 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Mupr13668g00001 489 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13668g00001 Mupr-Chr13668 821 6798 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13668g00001 8 185 Eukaryotic Initiation Factors Gene Family AT2G36660 32.620 9.56e-15 74.7