Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13664g00001 TATATTTGTTGGGGTGTCTGCTTTTGTCTCCTGCCTCCAATTTCACCACCCCTTTATCCTTATCTCCTCTTCGTCATCGTTCTGCTCTTACCCTTAAGAAAGAATTCTACTCAAAACACAGAGAGGGATCGTATAGCCAAAATTATGGCATTTGCAGGAACAACTCAGAAGTGCATGGCTTGTGACAAAACAGTTTATCTGGTTGATAAGTTGACTGCGGATAACCGAGTGTACCATAAGGCTTGCTTCAGATGCCACCACTGCAAAGGAACACTCAAGCTTAGCAACTATAACTCTTTTGAGGGAGTTCTTTACTGCAGGCCACACTTCGACCAACTATTCAAAAGAACTGGTAGCCTTGACAAAAGCTTCGAAGGGACACCAAAAATTGCTAAACCAGAGAAAACTGGCGATAACGAGAAACCTGCAGCCACCAAAGTCTCAAGTATGTTTGGTGGAACCAGAGAAAAATGTGCCGGTTGTCAGAAGACAGTGTATCCCACTGAAAAGGTTACTGTGAATGGAACTCCTTATCACAAGAGTTGTTTCAAATGCACTCATGGAGGGTGTGTTATTAGTCCCTCCAATTACATTGCACACGATGGCAAACTCTACTGCAAACACCACCACATCCAATTGATCAAGGAGAAGGGAAATTTAAGCCAGCTTGAAGGTGACCATGACAAGAGTGCAATGCAAGACAAAATCAACGGCGAACACATTTGTGGCTAA 732 0.4331 YICWGVCFCLLPPISPPLYPYLLFVIVLLLPLRKNSTQNTERDRIAKIMAFAGTTQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQLFKRTGSLDKSFEGTPKIAKPEKTGDNEKPAATKVSSMFGGTREKCAGCQKTVYPTEKVTVNGTPYHKSCFKCTHGGCVISPSNYIAHDGKLYCKHHHIQLIKEKGNLSQLEGDHDKSAMQDKINGEHICG 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13664g00001 243 Pfam LIM domain 58 112 IPR001781 -
Mupr13664g00001 243 Pfam LIM domain 158 212 IPR001781 -
Mupr13664g00001 243 SMART lim_4 57 109 IPR001781 -
Mupr13664g00001 243 SMART lim_4 157 209 IPR001781 -
Mupr13664g00001 243 ProSiteProfiles LIM domain profile. 156 216 IPR001781 -
Mupr13664g00001 243 MobiDBLite consensus disorder prediction 125 144 - -
Mupr13664g00001 243 ProSitePatterns LIM zinc-binding domain signature. 58 92 IPR001781 -
Mupr13664g00001 243 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 184 223 - -
Mupr13664g00001 243 ProSiteProfiles LIM domain profile. 56 116 IPR001781 -
Mupr13664g00001 243 FunFam LIM domain and actin-binding 1 152 222 - -
Mupr13664g00001 243 Gene3D Cysteine Rich Protein 153 222 - -
Mupr13664g00001 243 Gene3D Cysteine Rich Protein 52 122 - -
Mupr13664g00001 243 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 150 183 - -
Mupr13664g00001 243 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 51 83 - -
Mupr13664g00001 243 FunFam LIM domain and actin-binding 1 52 122 - -
Mupr13664g00001 243 PANTHER OS06G0237300 PROTEIN 45 143 - -
Mupr13664g00001 243 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 84 124 - -
Mupr13664g00001 243 CDD LIM2_SF3 158 218 - -
Mupr13664g00001 243 MobiDBLite consensus disorder prediction 127 141 - -
Mupr13664g00001 243 CDD LIM1_SF3 54 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13664g00001 Mupr-Chr13664 5937 8234 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Mupr13664g00001 LIM 3.9e-13 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13664g00001 K09377 - gmx:100499957 395.586