Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13637g00002 GTCCCTCCAATTCAGTATCATCTTCTTCTTCGTCTTTCCTTTGTCTGTCTTCTTTCCCTTTCCCCTCTCTTTCGAGGGTTTTTCTTTTTCTTTTCTTTTTTTCCTTTTTTATTTTCTCTTTTATTTTCTTTTTTACTTTCTCTTATTTTTCAGTTTTGCTTGTATTTTCTTTTGAATCCCCATTTCTTCTTCTTCTGCAACCCTAACCCTAGAATTGAAGATGCAGCCACAGAGGTTAAGGCAGCATGCCATGATGCAGCCCTCTCTCTACCACCACCCTGCTCTCCTTACTCCTCCTCAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGCTTTGATTCGAGTACATGCCGCAGTGTTTATGTTGGCAACATTCATCCCCAGGTTACAGAAACCCTTCTTCAAGAGCTTTTTTCAACTGCAGGCGCCCTTGAAGGATGCAAGCTTATTAGGAAAGAGAAGTCATCCTATGGCTTTGTGGACTACTTCGATCGCAGTTCAGCTGCATTTGCTATTGTAACTCTCAATGGGAGGAATATTTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGTCAGAGAGAGGATACCTCAGGACACTTTAATATTTTTGTCGGTGACCTTAGTCCTGAGGTTACAGATGCGACATTGTATGCTTGCTTCTCTGTATATCCTAGTTGTTCTGATGCAAAAGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGATTTGAGGCCCAAAGTGCTATAAATGATTTGACTGGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCCACCAAAGGGGCCAATGCCAATGATGAAAAGCAGGGTTCGGATTCTAAAAGTGTTGTGGAGTTAACTAATGGAACATCTGAAGAAGGCCAGGAAATAGCCAATGATGATGCTCCCGAGAAGAATCCTCAATATACCACTGTTTATGTTGGCAATCTTGCTCCAGAGTTCTCATTGGGTGTGAAATTGCAGGTTACGTCTGTTGATCTCCATCATCATTTTCATTCTCTTGGTGCTGGAACTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGGTACAGTACCCATGCTGAAGCAGCTCTTGCTATACAGATGGGTAATGCTCGAATTCTCTTTGGCAAACCTATCAAGTGTTCATGGGGTAGCAAGCCTACTCCTCCGGGAACAGCCTCAACTCCTCTTCCCCCACCTACTTCTACAAATGTGCCAGGGTTTTCTCTTGCAGGTCTTGCAGCGTATGAACGGCAGATGGCTTTGAGTAAAATGGGTGGTGCGCACGCCCTTATGCATCAGCAAGGTCAACATGCCCTGAAGCAGGCAGCCATGGGAATGGGTGCTCCTGGGGCTGGTTATGATGCAAGATTCCAGAATGTTGCGACCACCCAGCACCTAATGTACTATCAGTAA 1455 0.4454 VPPIQYHLLLRLSFVCLLSLSPLFRGFFFFFSFFPFLFSLLFSFLLSLIFQFCLYFLLNPHFFFFCNPNPRIEDAATEVKAACHDAALSLPPPCSPYSSSEPILSGNLPPGFDSSTCRSVYVGNIHPQVTETLLQELFSTAGALEGCKLIRKEKSSYGFVDYFDRSSAAFAIVTLNGRNIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSDAKVMWDQKTGRSRGFGFEAQSAINDLTGKWLGSRQIRCNWATKGANANDEKQGSDSKSVVELTNGTSEEGQEIANDDAPEKNPQYTTVYVGNLAPEFSLGVKLQVTSVDLHHHFHSLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILFGKPIKCSWGSKPTPPGTASTPLPPPTSTNVPGFSLAGLAAYERQMALSKMGGAHALMHQQGQHALKQAAMGMGAPGAGYDARFQNVATTQHLMYYQ 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13637g00002 484 SMART rrm1_1 318 395 IPR000504 GO:0003723
Mupr13637g00002 484 SMART rrm1_1 204 270 IPR000504 GO:0003723
Mupr13637g00002 484 SMART rrm1_1 119 188 IPR000504 GO:0003723
Mupr13637g00002 484 CDD RRM2_PUB1 202 274 - -
Mupr13637g00002 484 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 115 402 - -
Mupr13637g00002 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 268 IPR000504 GO:0003723
Mupr13637g00002 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 186 IPR000504 GO:0003723
Mupr13637g00002 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 335 393 IPR000504 GO:0003723
Mupr13637g00002 484 SUPERFAMILY RNA-binding domain, RBD 196 284 IPR035979 GO:0003676
Mupr13637g00002 484 SUPERFAMILY RNA-binding domain, RBD 107 196 IPR035979 GO:0003676
Mupr13637g00002 484 Coils Coil 483 484 - -
Mupr13637g00002 484 Gene3D - 198 291 IPR012677 -
Mupr13637g00002 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 192 IPR000504 GO:0003723
Mupr13637g00002 484 MobiDBLite consensus disorder prediction 276 302 - -
Mupr13637g00002 484 MobiDBLite consensus disorder prediction 276 312 - -
Mupr13637g00002 484 Gene3D - 111 197 IPR012677 -
Mupr13637g00002 484 Gene3D - 294 403 IPR012677 -
Mupr13637g00002 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 248 IPR000504 GO:0003723
Mupr13637g00002 484 SUPERFAMILY RNA-binding domain, RBD 308 404 IPR035979 GO:0003676
Mupr13637g00002 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 399 IPR000504 GO:0003723
Mupr13637g00002 484 FunFam Oligouridylate-binding protein 1C 294 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13637g00002 Mupr-Chr13637 20528 24793 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13637g00002 119 393 Eukaryotic Initiation Factors Gene Family AT3G16380 25.418 3.11e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13637g00002 K13201 - gmx:100813736 693.345