Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13625g00008 ATGGTGCGTATGGGATCGTTTTTGTTTATCCATTTTTCCTACCTTCGAATGCTGTCTGTGAGCGTCAAGGTGTACGTTAAGGCTCAGAAATCAAAAGCCTACTTCAAGAGATATCAAGTCAAATTCAAGAGAAGAAGAGAGGGGAAAACCGATTACCGAGCAAGGATTCGGTTGATTAATCAGGATAAGAACAAGTACAACACACCAAAATACCGCTTTGTGGTTCGATTTGTATCCTATGCTCACCTTAGTTTGATTCTCGAAGAGATGACCAACAAGGACATTATTGCCCAAATAACATCTGCTAGCATTGCTGGTGATATTGTTCTTGCTGCGGCTTATTCCCATGAGTTGCCTCAATATGGTCTTGAAGTAGGCCTCACAAACTATGCTGCAGCTTACTGCACTGGACTCTTGTTGGCCCGTCGAGTGCTTAAGCAGCTTGAAATGGATGAGGAGTATGAGGGAAATGTTGAGGCCACTGGAGAGGATTTTTCAGTGGAGCCTGCTGAGAGCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTGTTAGAACTACAACTGGCAATTGTGTCTTTGGTGCCCTTAAGGGAGCTCTGGATGGGGGTTTGGATATTCCTCACAGTGACAAAAGGTTTGCAGGCTTTGATAAGGAGAAGAAGGAGCTTGATGCTGAGGTTCATCGCAAATATGTCTATGGTGGACATATGTTGATAGAAGATGAACCAGAGAAATACCAGTCACACTTCAGTCAATATATCAAGCGTGGAATAGAGCCTGATGGTGTGGAGGAGCTGTACAAGAAGGTTCATGCTGCCATCCGTGCGAATCCTACTGGCAAGAAATCTGAGAAACAGCCACCCAAGGAGCACAAGCGGTACAACTTGAAGAAACTTACTTATGAGGAGAGGAAGGCCAAGTTGATTGCACGCTTGCAGGCTCTCAACTCTGCTGTTGACGACGATGAAGATGATGAGTGA 984 0.4522 MVRMGSFLFIHFSYLRMLSVSVKVYVKAQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFVSYAHLSLILEEMTNKDIIAQITSASIAGDIVLAAAYSHELPQYGLEVGLTNYAAAYCTGLLLARRVLKQLEMDEEYEGNVEATGEDFSVEPAESRRPFRALLDVGLVRTTTGNCVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDAEVHRKYVYGGHMLIEDEPEKYQSHFSQYIKRGIEPDGVEELYKKVHAAIRANPTGKKSEKQPPKEHKRYNLKKLTYEERKAKLIARLQALNSAVDDDEDDE 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13625g00008 327 Gene3D - 24 320 - -
Mupr13625g00008 327 Pfam Ribosomal L18 C-terminal region 264 317 IPR025607 -
Mupr13625g00008 327 SUPERFAMILY Translational machinery components 33 280 - -
Mupr13625g00008 327 FunFam 60S ribosomal protein L5 23 320 - -
Mupr13625g00008 327 PRINTS Ribosomal protein L5 signature 179 198 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Mupr13625g00008 327 PRINTS Ribosomal protein L5 signature 199 218 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Mupr13625g00008 327 PRINTS Ribosomal protein L5 signature 42 61 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Mupr13625g00008 327 Hamap 50S ribosomal protein L18 [rplR]. 36 275 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Mupr13625g00008 327 PANTHER RIBOSOMAL PROTEIN L5-RELATED 25 319 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Mupr13625g00008 327 Coils Coil 299 326 - -
Mupr13625g00008 327 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 36 210 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Mupr13625g00008 327 CDD Ribosomal_L18_L5e 63 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13625g00008 Mupr-Chr13625 75652 77743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13625g00008 24 319 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 78.146 1.01e-173 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13625g00008 K02932 - gmx:100817746 518.85