Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13616g00003 ATGGCAGGAGGTGCAAGTAAGGTTACCTTTATCTTCTTGATTGCTTTTGCCATTACTATTCCATGCCTTCGAGGGGGCATTGCTGAGTTTGACGATTTTCTCAAAGAACAAGCTGATGAGGCCCACGAAATCGCTCTCGAGTCCTACGTGCCCGACCCTGAAAACATTTCCGCCGAGCTCAATGTGCATGTTCATATGGCATTGGGGGAGGCGTTAGTGGAGGAATCAAACATCACAAGAAGGGAACTAAAGCAGAAATACACCGGACCATGCTTGGCCCTGAACCCAATCGATCGTTGTTGGAGGTGTAGGAAAAACTGGGCAAAGAACCGTTTCAAGTTAGCCAAATGTGTGAAGGGTTTCGGTAGAAAGACCGTTGGAGGACTCGGTGGCAAAATCTATGTAGTCACTGACCCCTCCGATGATGACATGGTTAGCCCCAAACCTGGGACTCTTAGGTTCGGCGTCGTCCAAAAGGAACCATTGTGGATCATATTTGCGCGAAGCATGATCATCAGACTGAAGCAGGAACTGTTGGTTTCATCCGACAAAACCATCGACGGTCGTGGAGCTAACGTGGTGATCAAGGAAGGTGCTGGCATTACCATGCAATTCGTGACCAACGTCATCATCCATGGTCTTCACATCCATAAGATCAAGGCCATGAATGGTGGCATGATTAGAGACTCTTGGAACCACGTTGGACTAAGAACTAGGAGTGATGGGGATGCCATCTCTATTTTTAGTTCTTCAAACATTTGGATTGACCATCTTTCCCTATCTGACTGCGAGGATGGTCTTGTTGACGTTATTCAGGGTTCCACTGCCATCACCATCTCAAATTGTCACATGACTAAACATAACGATGTGATGTTGTTTGGAGCTAGTGATACCTACAGCAATGACAAGATAATGCAGATTACAGTAGCATTCAACCATTTTGGGCAGGGCTTGATCCAGAGAATGCCGAGATGCAGATTTGGTTTTTTCCATGTGTTGAACAATGACTACACTCACTGGCTGATGTATGCAATTGGTGGCAGCTCAGGACCAACGATTCTTAGCCAGGGAAACCGTTTCATTGCACCCAACAACGATGCTGCCAAAGAAATCACACACAGGGACTATGCAGCACCTGCTGTGTGGGAAAAATGGCAATGGAGATCAGAGAATGACTTATACATGAATGGGGCTAAGTTTGTTCAGTCAGGAGCACCCATTGGGAAGCTACCATTCAACAAAGGGTTCCTAATGAAACCAAGACATGGGAGTCAAGCCAACAGGCTTACACGCTTTTCAGGGGCCCTCAATTGCAGGGTTTTAAATTCCGACAGTGATCAC 1341 0.4661 MAGGASKVTFIFLIAFAITIPCLRGGIAEFDDFLKEQADEAHEIALESYVPDPENISAELNVHVHMALGEALVEESNITRRELKQKYTGPCLALNPIDRCWRCRKNWAKNRFKLAKCVKGFGRKTVGGLGGKIYVVTDPSDDDMVSPKPGTLRFGVVQKEPLWIIFARSMIIRLKQELLVSSDKTIDGRGANVVIKEGAGITMQFVTNVIIHGLHIHKIKAMNGGMIRDSWNHVGLRTRSDGDAISIFSSSNIWIDHLSLSDCEDGLVDVIQGSTAITISNCHMTKHNDVMLFGASDTYSNDKIMQITVAFNHFGQGLIQRMPRCRFGFFHVLNNDYTHWLMYAIGGSSGPTILSQGNRFIAPNNDAAKEITHRDYAAPAVWEKWQWRSENDLYMNGAKFVQSGAPIGKLPFNKGFLMKPRHGSQANRLTRFSGALNCRVLNSDSDH 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13616g00003 447 Pfam Pectate lyase, N terminus 27 83 IPR007524 GO:0030570
Mupr13616g00003 447 Gene3D - 94 437 IPR012334 -
Mupr13616g00003 447 PANTHER PECTATE LYASE 18-RELATED 42 440 IPR045032 GO:0030570
Mupr13616g00003 447 Pfam Pectate lyase 175 360 IPR002022 -
Mupr13616g00003 447 SUPERFAMILY Pectin lyase-like 70 438 IPR011050 -
Mupr13616g00003 447 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Mupr13616g00003 447 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Mupr13616g00003 447 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Mupr13616g00003 447 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Mupr13616g00003 447 PRINTS Pollen allergen Amb family signature 415 438 IPR018082 -
Mupr13616g00003 447 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Mupr13616g00003 447 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Mupr13616g00003 447 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Mupr13616g00003 447 SMART amb_all 169 366 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13616g00003 Mupr-Chr13616 12866 15850 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13616g00003 6 440 Polysaccharide Lyase AT5G15110 55.388 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13616g00003 K01728 - gmx:100780236 738.799