Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13589g00001 ATGGCTTCATCTTTGGAGGAGCTTCTTGCAGAGGAGGGGTTCAAAGGAAGCAGAAGAATGACAAGGTCTAGATCCTCCTTCCACCATGGTGCTTCAAGCGATCCTCTTTACTCATTGGAAGGGAGATTTTGTGTATCAAGTGAAAGAATTCCAACACACAGAACAAGACCTAAAACTCGTATTGCTATGAATCGGAGGTCAAGGGATAATGTTTTTTTGAGAGACAAAATGGATTCCGGCAAAGGAGTTGATGCCAATTCTTCAGAATACATGCCAAGGTATGAGATTACTGAGCAAGAAGCTAGAAGAGTTAAAGATACTCATTCAAAACAAGTGTCTACAAAAGGAGGCAAAGAAGAGAATTTCAATGAACTTGTGGACGACGAAAATCCTGTGAAGGATGCAAAGCTGAAAGGCCCAAGTTCCAGTGTGCATATGCTTAGACAGTCTAGTGAAACCAGAAAGAATATAAAAGCCCAGATGGACTCATTCACTAGATCTAATAGCAGTCTTGCTCTTGATGAAGTTGCTGTCCAAGCAGTAGTTTCCATTCTAAATGGATATATAAAGCGTTTTCCACAAGATGAGGATTTTCGGTCTACATTGCGTCACAATTGTTTCTCCTCCTTGAATTTTATCGAACTAGAAGAAGAGAACATTACTGAGACCAAAGTCTTAAGAAGTCTTGAGCAAGCAATTGAGGCCGTTGAAGAATCTGCTGAGGAACCTATATCTGCCACATATCTGAAAAGAACCACTATGCAGCTTAGCATTATTACAGGTTTGAGTTTAAATGATTTCAAGTACGAATGTACATGTGGGATTCCAAATTATAAGTTGTCAGCCTGTGCTCATCTTTACCTCAGTGTGGTATACATGATGCAGAAAAAAAATAAGGTGTCAGCAAAGCATCTCTTGCAAGTGTTTTGTGATTCACCTTTTCAGGCACGGACAATATTGTTGCCTGAACTATGGGAGCATCTTTTTTCTCCACAATTTTCTCATTTGAAGGCATGGTACAACAAGGAAGCACAAGTTCTAGTAGATGCACCAAGCAAAGTAAGAAAGCTAAAATTTCTTCAGAAAGTGTATAATGAACATTTGGATTCTGGAACTCATATATTTGCTGTATACTACAAAGATTGGCTCACTGAAGGAGTAGAATCTCCTCCTATTCCTTCAATTGGCATTCCATCAGTTTCTGCCACAGGAAGTCAAGAGGGAAGTTCACTTGGTCATTCTTCTGAGTCTACTAGCTCTATTGCTCCATTCTCACCACAGTCAATGGTCAGCAAGAAACTCTATGATTCTATGTTTGGTAGCTCGAGTAAACCTGGAATTTACCAAGTCAAAGACATTAAGGATGGGGATAACTTAGAAAATTGTGTCAAAGGCTCTTACGGTTCAACTATTGTTAAACAGACATTAACATATGAATCTGAAACTGTTGAATTTACAGATCGAGATATTGAAGATTTCGCTCAAGGTGTAGCAATTGATACAATCAAGCCTCAGAAAGTAAGTTCAATGACGTCTGTAGAAGAATGGAAAAGGAATTCCAGCGATGACATTAATAACTCTTTCTCCATGCAAACTAATTTTAACGGCCACATCATTGATGCTCTACCACATGAAAAAGAAAATGAACTTGCTCCCGAAAAGCCAAATAAGACAAGTTCTGCTCTTCAAGGATCATATTTTCCAAGCACTCCAGAGGAATTTATTTGTCCTCTTACTGGAAATCTCTTTGAGGAACCAGTCACCCTAGAGACAGGTCAAACCTTTGAAAAAGAGGCCATCAAAGCATGGCTTGAAAAGGGAAACAGAACATGCCCGGTAACAGGAAATACTTTGGAGTGTGTGGCCATGCCCTTTACCAACCTTATTTTGAAGCGTTTGATTGATAATTGGAAGTCAGAACGTTTTGATTATCTTCTTGAACTTGCTTCTCAGACAATGGAGAATTCAGAGGAGCTTAAGTTGAAAAAGAGGGATGAGGCTGCTGTTTTCAAGTTAGAGAGTCTTCTCTCCTCATTGAAAGAAGAGGACAAATCAACTTATGCTAAGCATCTCATCTCTTTGGGAGTTCTTCCATTTCTTTATAGGAGATTTGAACAGGGAAATGTGGAAGAAAAATCACACGTGCTGTCACTCTTGCTTAATTGTATTCAAGTGGACTCTGGTTGCATATATCAGATAGCAAGAAGTATTAACAGAAAATGTCTTCTTGAGCTTCTTCACAGCAAGGAAGTTACCCCAACAACAAATGCAATACTATTCCTTTCTGAACTTTTATCAATGAAGAGGAGAAAAGATGTTACTTCATTTATAAGTGGTTTGGCGGGTGAAAAAGTATTTAATATAATGCATATGAATCTGAAGAATTCTTGTCCATTTGAAAAGCACTTAATTTCTGTCCTTTTGTTACACTTTGATCTGCTGGAAGATGAAGAAAAAAGGGGTGAAGAGTTGCTAAAGAAGCTGTTAGAGTCGTTGATTGGTGATAGAGAAAGGCCATTTTTGGAGAGTTTAGATTTGGTGAGAGTGTGTCTAATAAGTGTGACATGGTTGAGCTCCTCACTGTCTAAGCTATTTAGTATCCATCATCTCTCACTTGAAAGGAATTAA 2628 0.3862 MASSLEELLAEEGFKGSRRMTRSRSSFHHGASSDPLYSLEGRFCVSSERIPTHRTRPKTRIAMNRRSRDNVFLRDKMDSGKGVDANSSEYMPRYEITEQEARRVKDTHSKQVSTKGGKEENFNELVDDENPVKDAKLKGPSSSVHMLRQSSETRKNIKAQMDSFTRSNSSLALDEVAVQAVVSILNGYIKRFPQDEDFRSTLRHNCFSSLNFIELEEENITETKVLRSLEQAIEAVEESAEEPISATYLKRTTMQLSIITGLSLNDFKYECTCGIPNYKLSACAHLYLSVVYMMQKKNKVSAKHLLQVFCDSPFQARTILLPELWEHLFSPQFSHLKAWYNKEAQVLVDAPSKVRKLKFLQKVYNEHLDSGTHIFAVYYKDWLTEGVESPPIPSIGIPSVSATGSQEGSSLGHSSESTSSIAPFSPQSMVSKKLYDSMFGSSSKPGIYQVKDIKDGDNLENCVKGSYGSTIVKQTLTYESETVEFTDRDIEDFAQGVAIDTIKPQKVSSMTSVEEWKRNSSDDINNSFSMQTNFNGHIIDALPHEKENELAPEKPNKTSSALQGSYFPSTPEEFICPLTGNLFEEPVTLETGQTFEKEAIKAWLEKGNRTCPVTGNTLECVAMPFTNLILKRLIDNWKSERFDYLLELASQTMENSEELKLKKRDEAAVFKLESLLSSLKEEDKSTYAKHLISLGVLPFLYRRFEQGNVEEKSHVLSLLLNCIQVDSGCIYQIARSINRKCLLELLHSKEVTPTTNAILFLSELLSMKRRKDVTSFISGLAGEKVFNIMHMNLKNSCPFEKHLISVLLLHFDLLEDEEKRGEELLKKLLESLIGDRERPFLESLDLVRVCLISVTWLSSSLSKLFSIHHLSLERN 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13589g00001 875 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 569 644 IPR013083 -
Mupr13589g00001 875 Pfam U-box domain 571 640 IPR003613 GO:0004842|GO:0016567
Mupr13589g00001 875 SUPERFAMILY ARM repeat 642 767 IPR016024 -
Mupr13589g00001 875 ProSiteProfiles U-box domain profile. 569 644 IPR003613 GO:0004842|GO:0016567
Mupr13589g00001 875 ProSiteProfiles Zinc finger SWIM-type profile. 256 294 IPR007527 GO:0008270
Mupr13589g00001 875 PANTHER OS04G0584500 PROTEIN 1 528 - -
Mupr13589g00001 875 MobiDBLite consensus disorder prediction 396 424 - -
Mupr13589g00001 875 SUPERFAMILY RING/U-box 565 640 - -
Mupr13589g00001 875 MobiDBLite consensus disorder prediction 394 424 - -
Mupr13589g00001 875 CDD RING-Ubox_PUB 571 619 IPR045210 -
Mupr13589g00001 875 SMART Ubox_2 573 637 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13589g00001 Mupr-Chr13589 368 5487 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13589g00001 552 637 U-box Gene Family AT1G29340 39.773 2.83e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13589g00001 - - gmx:100820501 1267.29