Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1356g00004 ATGGCGGGAAGGCAAGGCGAGTATCACGTGCCTCTCGCGTGGGCTCGCGCCAAGGTTCCGATGGCGAGCAAGGTCAGCGACCACCACTTGTCCACCGTCCGATCCATCGTGGGTTCCGAATTCACCGACATGGACATCATCAGAGCCCTCCACATGGCCAAGAACGACGTCACTGCGGCTATCAACATCATCTTCGACACCCCTCAAAGATTCAAGCCCACTCGGCTCAGCAATCCCCAACCGGTTTCTCCTCCAAAACTGACCCCTCCCACTCCCACTGTCACCGCAAACTCCAAACGCAGTGGCAGCGAATTTCACAGCGATAATAACAGCGATGATTGGTGGCTCGTGAGTTGTGGCGAAATGACGGGTCTGTCCACATGTAAAGGGAGGACTATAAACACCAGCGAGACGGTGGTTTTCAAGTTTCCGACGAAGACCCTCTCCGCCTCACCCTCTTCGGGCAAGGGGTTTGGTCGGGCAGCGACTTGTTCGGAAATAGTTCGATTCTCCACGGAACAAGCTGGGGAGATTGGTAGAATACCGAATGAATGGGCTCGGTGTCTTTTGCCTCTTGTGCGGGATCGTAAGGTTAGGATTGAGGGGCAGTGTAAATACGCGCCCAATGTTTTGGGGATCATGGACTCCATTGTTTTATCGGTGAGTGTATTTATCAATAGTTCCATGTTTGGTAAGCATCATCAGGTATCTCTCAAGGATGCTGCCAACTCCACAGATGAATCAGTGTTTCATCCACTTCCAACTTTGTTTCGATTGCTTGGCCTAAACCCTTTTAAGAAGGCAGAGTTAACTCCTGGGGATTTCTATTCCAACAAGCGTCCTCTCAGTCAAAGGGAGAGATATTCTCTTCAGGTCACATTACCACGTGCCAAGTCCGAGCATCCTTCTCAAAATGGTCATGAGAATGACAATGAGGATTCCATTTCTGAAGTTGATGTTGAGAATATTGTTGGTGTTGGATCAAGCTCAGAGTTAGAGGAAATGGACCCCCCTGGTAATCTTCTGTGTGAACTGCGGCCCTATCAGAAGCAGGCGCTTTACTGGATGATCCAGATGGAGAAGGGACAATCCATGGATGAGACAGCAACAACTCTCCACCCATGTTGGGAGGCATATCATCTGGCTGACAAGAGGGAGCTTGTTATTTATTTGAATGCATTTTCTGGTGAAGCCACAATAGAATTTCCTAGCACCCTTCAAATGGCCAGAGGAGGAATTTTGGCAGATGCTATGGGGCTTGGAAAGACAATCATGACCATATCCCTTCTCCTTGCCCATTCAGGAAAGGGTGGATTTATAGGCACTCAACCCATAACCCAGTCCTTTATTGAAGGGAGTGATGTTAATGATACAGTGCACAATATTTCAAGCATACCCAAGAAGGCAAACAAATTTGCTGGCTTTGATAAACCGACGAAGCAAAAGAATGCTCTAACAAGTGGTGGCAACTTGATAATATGCCCCATGACTCTTCTTGGGCAATGGAAGGCAGAGATTGAGACTCATGCGCACCCTGGCTCTCTTTCTCTATACGTTCATTATGGACAAAGTAGGCCAAAAGATGCAAAAAGTCTCTCTCAAAGTGATGTTGTAATTACTACATATGGAATTTTGGCCTCTGAATTTTCCAGTGAGAATGCAGAGGATAATGGTGGACTCTTTTCAATTCGGTGGTTTAGAGTTGTTCTTGATGAAGCACATACCATAAAATCTTCTAAAAGCCAAATTTCTATAGCAACTGCTGCTCTAATTGCTGACAGACGTTGGTGTCTAACAGGCACTCCTATTCAGAACAGCCTTGAGGATATTTACAGTCTTCTGCGGTTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTTATTCAGAAACCATTTGAGGGTGGTGATGAAAGAGGGCTGAAGTTAGTTCAATCAATTTTGAAGCCAATCATGTTGAGGAGAACCAAACATAGCACAGATCGAGAGGGCAAGCCCATCCTAGTTCTCCCTCCAGCTGATATGCAGGTAGTGTACTGTGAACCCACAGAAGCTGAAAAAGACTTTTATGAAGCACTATTCAAAAGATCTAAGGTAAAGTTTGACCAGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGTCGAGGTGATACTCAAGAATTTGCTGATCTAAACAAACTAGCTAAGCGCTTTCTTCGAGGAACCTATAATGCTTTTGAAGGTGAAGTAAAAGATGTACCTTCACGGGCTTATGTTCAAGAAGTTGTGGAAGAACTACGCAAAGGGGAGCAAGGGGAGTGTCCAATATGCCTTGAAGCATTTGAAGATGCAGTGTTGACACCTTGTGCTCACCGTTTATGTCGGGAATGCCTCTTGGCAAGTTGGCGAAATGCTACTTCTGGTTTATGTCCTGTTTGTAGGAAAACGATTGGCAGGCAGGATCTTATCACTGCCCCTACTGAGAATCGGTTTCAGGTGGATATTGAGAAGAACTGGGTAGAGTCGTGCAAGGTAACTGTTCTTTTGAATGAACTGGAAAATCTTCGCTCCTCAGGCTCCAAAAGCATTGTTTTTAGCCAATGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTGCTCGGAATAACATTTCATTTGTTCGTCTTGATGGGACGTTGAATCTGCAGCAGCGGGAAAAAGTAATCAAGCAATTCTCAGAAGACAGCAATACCCTGGTGTTGTTAATGTCTCTAAAAGCTGGTGGAGTGGGTATAAACCTAACAGCCGCTTCTAATGCTTTTGTCATGATAATTTTTCACTTTGGACAGGACCCATGGTGGAATCCAGCTGTTGAGGAACAAGCTGTTATGCGTATTCATCGCATTGGACAAACAAAGAAGGTGGCCATTAAACGGTTTATTGTGAAGGGGACAGTTGAGGAGAGAATGGAGGCAGTGCAAGCACGTAAACAACGAATGATTTCTGGTGCCTTGACTGATCAAGAAGTTCGAACTGCTCGGATTGAGGAAAAATCGGTACTGTGA 3099 0.4553 MAGRQGEYHVPLAWARAKVPMASKVSDHHLSTVRSIVGSEFTDMDIIRALHMAKNDVTAAINIIFDTPQRFKPTRLSNPQPVSPPKLTPPTPTVTANSKRSGSEFHSDNNSDDWWLVSCGEMTGLSTCKGRTINTSETVVFKFPTKTLSASPSSGKGFGRAATCSEIVRFSTEQAGEIGRIPNEWARCLLPLVRDRKVRIEGQCKYAPNVLGIMDSIVLSVSVFINSSMFGKHHQVSLKDAANSTDESVFHPLPTLFRLLGLNPFKKAELTPGDFYSNKRPLSQRERYSLQVTLPRAKSEHPSQNGHENDNEDSISEVDVENIVGVGSSSELEEMDPPGNLLCELRPYQKQALYWMIQMEKGQSMDETATTLHPCWEAYHLADKRELVIYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTIMTISLLLAHSGKGGFIGTQPITQSFIEGSDVNDTVHNISSIPKKANKFAGFDKPTKQKNALTSGGNLIICPMTLLGQWKAEIETHAHPGSLSLYVHYGQSRPKDAKSLSQSDVVITTYGILASEFSSENAEDNGGLFSIRWFRVVLDEAHTIKSSKSQISIATAALIADRRWCLTGTPIQNSLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDERGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADMQVVYCEPTEAEKDFYEALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLNKLAKRFLRGTYNAFEGEVKDVPSRAYVQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNATSGLCPVCRKTIGRQDLITAPTENRFQVDIEKNWVESCKVTVLLNELENLRSSGSKSIVFSQWTAFLDLLQIPFARNNISFVRLDGTLNLQQREKVIKQFSEDSNTLVLLMSLKAGGVGINLTAASNAFVMIIFHFGQDPWWNPAVEEQAVMRIHRIGQTKKVAIKRFIVKGTVEERMEAVQARKQRMISGALTDQEVRTARIEEKSVL 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1356g00004 1032 Pfam HIRAN domain 122 221 IPR014905 GO:0003676|GO:0008270|GO:0016818
Mupr1356g00004 1032 CDD SF2_C_SNF 858 992 - -
Mupr1356g00004 1032 MobiDBLite consensus disorder prediction 294 318 - -
Mupr1356g00004 1032 Pfam Zinc finger, C3HC4 type (RING finger) 789 835 - -
Mupr1356g00004 1032 Pfam SNF2-related domain 348 736 IPR000330 GO:0005524|GO:0140658
Mupr1356g00004 1032 MobiDBLite consensus disorder prediction 72 107 - -
Mupr1356g00004 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 760 856 IPR013083 -
Mupr1356g00004 1032 ProSiteProfiles Zinc finger RING-type profile. 792 832 IPR001841 -
Mupr1356g00004 1032 SMART helicmild6 891 981 IPR001650 -
Mupr1356g00004 1032 Gene3D - 403 670 IPR038718 -
Mupr1356g00004 1032 SMART ring_2 792 831 IPR001841 -
Mupr1356g00004 1032 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 403 620 IPR014001 -
Mupr1356g00004 1032 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 658 IPR027417 -
Mupr1356g00004 1032 FunFam DNA repair protein RAD5B 400 659 - -
Mupr1356g00004 1032 Gene3D - 674 1031 IPR027417 -
Mupr1356g00004 1032 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 106 1017 - -
Mupr1356g00004 1032 MobiDBLite consensus disorder prediction 92 107 - -
Mupr1356g00004 1032 SMART HIRAN_2 117 225 IPR014905 GO:0003676|GO:0008270|GO:0016818
Mupr1356g00004 1032 CDD DEXDc_SHPRH-like 345 658 - -
Mupr1356g00004 1032 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 862 1032 IPR001650 -
Mupr1356g00004 1032 Pfam Helicase conserved C-terminal domain 862 981 IPR001650 -
Mupr1356g00004 1032 ProSitePatterns Zinc finger RING-type signature. 807 816 IPR017907 -
Mupr1356g00004 1032 SMART ultradead3 341 642 IPR014001 -
Mupr1356g00004 1032 SUPERFAMILY RING/U-box 779 838 - -
Mupr1356g00004 1032 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 670 1021 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1356g00004 Mupr-Chr1356 35998 47580 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1356g00004 21 1032 RAD5 or RAD16-like Gene Family AT5G22750 69.752 0.0 1482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr1356g00004 SNF2_N 1.9e-83 CL0023