Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13566g00001 ATGGGGAGGCCCTCGAAGACTCAGGTCTCTAACGACTCATCCTCCGAGGAAGAGGAGGAGGACGCCGCCGCCAACCACCAAATCGAAGACGATGACGACGAGCTCGAAGCGGTGGCTCGCTCCGCTAGCTCCGACGACGACGATAATTCCCCCGATGAAGCCGGCGAAGACGATGATGAGGACAAACAGGATGAAAGTAATGCTGATCCTGAAGTTAGCAAGCGTGAGAAGGCCAGATTGAGAGAAATGCAAAACTTGAAGAAACAGAAGATCCAGGAGATATTGGATGAACAAAATGCGAGCATTGATGCTGATATGAATAATAGAGGAAAGGGCCGATTAAAGTATCTCCTACAGCAAACTGAGCTGTTTGCTCATTTTGCCAAGGGTGACCAATCTTCTCAAAAGAAGACAAAGGGAAGGGGACGTCATGCATCAAAAGTAACTGAAGAAGAGGAAGATCAAGAATACCTTAAAGAAGAAGAAGATGGTTTAGCAAACACACGGCTAGTGACTCAACCATCATGTAAGCATTTTTTCCTTTCTTATCTGCATACTTGCATGGGCAAATTGCTCTATTTTAGTATCCAAGGGAAGATGAGGGATTACCAACTTGCTGGGCTAAACTGGCTCATACGATTGTATGAGAATGGCATAAATGGAATTCTGGCAGATGAAATGGGGCTTGGAAAAACCTTACAAACAATATCTTTGTTAGGCTACTTACATGAGTTCAGAGGAATAACAGGTCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTCGGCGCTTTTGCCCTGTTTTACGTGCTGTAAAGTTCCTTGGCAATCCTGATGAGAGGAAGCACATAAGAGAGGAGTTACTTGTTGCTGGTAAGTTTGATGTGTGTGTTACAAGTTTTGAAATGGTAATCAAGGAGAAGTCTGCTTTACGTCGATTTAGTTGGCGCTACATAATTATCGATGAGGCCCATCGAATCAAGAATGAGAACTCACTCCTGTCCAAAACAATGAGGCTGTACAATACAAACTATCGACTCCTGATAACTGGCACACCATTACAGAACAATCTTCATGAACTCTGGGCTCTTCTCAACTTTCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGATGAACATGAGGTTGTTCAACAACTACACAAGGTCCTCCGTCCATTTCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGGTTGCCACCAAAAAAGGAAACCATTCTCAAAGTTGGCATGTCGCAAATGCAGAAACAGTATTATAAGGCATTGCTGCAGAAGGATCTGGAGGTTGTGAATGCAGGTGGAGAACGGAAACGTCTCCTTAATATAGCAATGCAACTTCGCAAATGTTGTAATCACCCATACCTCTTCCAAGGTGCCGAACCTGGTCCTCCCTATACAACAGGAGATCATCTCATTACAAATGCTGGTAAAATGGTTCTACTGGATAAGTTACTTCCTAAACTAAAAGAGCGTGATTCTAGGGTCCTTATATTTTCTCAGATGACTAGGCTGCTAGACATACTTGAAGATTATCTCATGTTTCGTGGATACCAATATTGTCGCATTGATGGCAATACTGGTGGTGAAGATCGGGATGCTTCCATTGAGAGTTTCAACAAACCAGGAAGTGAAAAATTTGTCTTCTTGTTATCTACTCGAGCTGGAGGCCTTGGCATTAATCTTGCTACTGCTGATGTTGTCATTCTTTATGACAGTGACTGGAACCCACAAGTTGACCTGCAAGCTCAGGATCGTGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTCCGATTTTGCACCGAGTATACAATTGAGGAAAAAGTCATTGAAAGGGCCTACAAAAAGCTTGCACTTGATGCTCTGGTGATTCAACAAGGGCGATTAGCTGAACAGAAGACTGTTAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGTACAATTACAGATGAGGATATTGACAGAATTATTGCTAAAGGAGAGGAAGCAACAGCTGAGCTTGATGCTAAGATGAAAAAATTTACTGAAGATGCTATCAAATTTAAGATGGACGACACTGCTGAGTTGTATGATTTTGATGATGAAAAGGATGAGAACAAATTTGATTTCAAAAAGATTGTGAGTGAAAACTGGGTTGAGCCACCAAGACGAGAACGGAAGCGCAATTACTCGGAGTCTGAATACTTCAAGCAAACAATGCGCCAAGGCGGTCCTACTAAACCAAAAGAGCCCCGTATTCCTAGGATGCCACAATTGCATGATTTCCAGTTTTTCAACACACAAAGGCTAAGTGAGCTGTACGAAAAGGAAGTTCGCTACCTCATGCAAACACATCAGAAGAATCAGTTGAAAGACTCCATAGATGTTGATGAACCAGAAGAGGTGGGAGATCCATTGACCGCTGAAGAGTTAGAAGAAAAGGAGCAGTTGCTAGAGGAGGGATTTTCATCATGGAGCCGGAAGGATTTTAATGCTTTCATCAGGGCCTGTGAAAAGTATGGCCGAAATGATATAAAAAGTATTGCTTCTGAGATGGAAGGGAAAACACAAGAGGAAGTTGAAAGATATGCAAAAGTCTTCAAGGAAAGATACAAGGAATTAAATGATTATGATAGAATTATTAAGAACATTGAAAGAGGGGAGGCGAGAATATCCCGGAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAAGAATCCTTGGCTAGAATTGAAGATACAATATGGACAAAACAAAGGGAAGTTATACAATGAAGAATGTGATCGATTTATGATATGCATGATTCACAAACTTGGCTATGGTAATTGGGATGAGTTGAAGGCAGCTTTTCGAATGTCGCCCTTGTTTCGTTTTGATTGGTTTGTCAAGTCTCGCACAACACAGGAACTTACAAGGAGGTGTGACACCCTCATTCGGCTGGTAGAGAAGGAAAACCAAGAACATGACGAGAGGGAGAGACAAGCTCGTAAAGAGAAGAAACTTGCGGCCAAGAGCATGACCCCATCGAAGCGTTCCTTGCCTAGACAGACTGAGAGCCCCTCTCTGAAGAAGCGGAAACAGTTAACTATGGATGACTATATAAGCTCGAAGTCGCATTGCGATTTTCCGGAAGCTGACTCTGGTATTGTGACAGGCGAAGCGGAAAAAATAAATGGA 3279 0.4215 MGRPSKTQVSNDSSSEEEEEDAAANHQIEDDDDELEAVARSASSDDDDNSPDEAGEDDDEDKQDESNADPEVSKREKARLREMQNLKKQKIQEILDEQNASIDADMNNRGKGRLKYLLQQTELFAHFAKGDQSSQKKTKGRGRHASKVTEEEEDQEYLKEEEDGLANTRLVTQPSCKHFFLSYLHTCMGKLLYFSIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERKHIREELLVAGKFDVCVTSFEMVIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDEHEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYQYCRIDGNTGGEDRDASIESFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDEKDENKFDFKKIVSENWVEPPRRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDSIDVDEPEEVGDPLTAEELEEKEQLLEEGFSSWSRKDFNAFIRACEKYGRNDIKSIASEMEGKTQEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQELTRRCDTLIRLVEKENQEHDERERQARKEKKLAAKSMTPSKRSLPRQTESPSLKKRKQLTMDDYISSKSHCDFPEADSGIVTGEAEKING 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13566g00001 1093 Coils Coil 1001 1035 - -
Mupr13566g00001 1093 MobiDBLite consensus disorder prediction 1 79 - -
Mupr13566g00001 1093 ProSiteProfiles SANT domain profile. 850 902 IPR017884 -
Mupr13566g00001 1093 MobiDBLite consensus disorder prediction 129 157 - -
Mupr13566g00001 1093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 415 IPR027417 -
Mupr13566g00001 1093 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 212 377 IPR014001 -
Mupr13566g00001 1093 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 763 853 IPR036306 GO:0003677|GO:0006338|GO:0031491
Mupr13566g00001 1093 SUPERFAMILY Homeodomain-like 906 1028 IPR009057 -
Mupr13566g00001 1093 Gene3D iswi atpase 906 938 - -
Mupr13566g00001 1093 SMART sant 953 1014 IPR001005 -
Mupr13566g00001 1093 SMART sant 851 900 IPR001005 -
Mupr13566g00001 1093 Pfam HAND 764 847 IPR015194 GO:0003677|GO:0006338|GO:0031491
Mupr13566g00001 1093 CDD SF2_C_SNF 501 626 - -
Mupr13566g00001 1093 Gene3D - 851 905 - -
Mupr13566g00001 1093 MobiDBLite consensus disorder prediction 132 153 - -
Mupr13566g00001 1093 SMART helicmild6 531 615 IPR001650 -
Mupr13566g00001 1093 Coils Coil 73 100 - -
Mupr13566g00001 1093 FunFam ISWI chromatin-remodeling complex ATPase CHR11 752 850 - -
Mupr13566g00001 1093 FunFam ISWI chromatin-remodeling complex ATPase CHR11 421 713 - -
Mupr13566g00001 1093 Gene3D - 939 1042 - -
Mupr13566g00001 1093 MobiDBLite consensus disorder prediction 48 66 - -
Mupr13566g00001 1093 MobiDBLite consensus disorder prediction 14 36 - -
Mupr13566g00001 1093 Pfam Helicase conserved C-terminal domain 503 615 IPR001650 -
Mupr13566g00001 1093 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 196 1059 - -
Mupr13566g00001 1093 SMART ultradead3 196 388 IPR014001 -
Mupr13566g00001 1093 Pfam SNF2-related domain 213 480 IPR000330 GO:0005524|GO:0140658
Mupr13566g00001 1093 MobiDBLite consensus disorder prediction 1019 1039 - -
Mupr13566g00001 1093 FunFam ISWI chromatin-remodeling complex ATPase CHR11 939 1043 - -
Mupr13566g00001 1093 SUPERFAMILY Homeodomain-like 854 904 IPR009057 -
Mupr13566g00001 1093 Gene3D ISWI, HAND domain 752 850 IPR036306 GO:0003677|GO:0006338|GO:0031491
Mupr13566g00001 1093 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 851 905 - -
Mupr13566g00001 1093 Gene3D - 201 416 IPR038718 -
Mupr13566g00001 1093 FunFam Chromatin-remodeling complex ATPase 201 416 - -
Mupr13566g00001 1093 Pfam SLIDE 908 1018 IPR015195 GO:0003677|GO:0005634|GO:0006338
Mupr13566g00001 1093 MobiDBLite consensus disorder prediction 1019 1062 - -
Mupr13566g00001 1093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 417 698 IPR027417 -
Mupr13566g00001 1093 CDD SANT 854 898 IPR001005 -
Mupr13566g00001 1093 Gene3D - 421 713 IPR027417 -
Mupr13566g00001 1093 CDD DEXHc_SMARCA1_SMARCA5 197 417 IPR044754 GO:0005524
Mupr13566g00001 1093 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 505 656 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13566g00001 Mupr-Chr13566 1122 11787 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13566g00001 221 642 RAD5 or RAD16-like Gene Family AT1G02670 27.525 4.03e-43 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr13566g00001 SNF2_N 1.8e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13566g00001 K11654 - gmx:100791510 1982.22