Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13525g00001 ATGTCGTCGTCGTCGTCGTTGGGTTCCCCAAAGAAGCGACCGAAATCGCAAGTGGAGGAGGAGGATGGCGTTTGTTGCGGGATTTGCTACGCCGAGCGTGGAGTTTCGATTGCAGGGGAAATCGATTGCTGCAGCCACTACTTTTGCTTCGTTTGCATCATGGAATGGGCCAAGCACGAGTCTCGATGCCCAATTTGTCGCCAGAGATTCTCCAACGTTCGCAGGCTCCCTATGCACGGCGTCTTTTCTTCCTCCCGGGACGTTAAGGTCCCTCGTCGTGACCAGGTTTATCATCCTCATGGAAATGTGGCAACTGGTCCTGTTGACTCTTATGCTGAAGCCAAATGTAGTACCTGTCATGCTGGGACAGATGAACATCTTCTACTACTTTGTGATCTTTGTGATACTGCTTCACACACATACTGTGTTGGCCTGGGCTATACCGTTCCCGAAGGTGACTGGTTTTGTCCTGATTGTACTATTTCTCGGGAGACCAATACCAATGAAGAATCAGACCAACAAAATGTTGCGCCAGCTGCTGAGCCAAGTGTAACCATCGATATCTTTGATATTGTGAGGGAAACAGGCAGCCGGGTGGTTAAAAGACCAAGGAAATCTCCTTTACAACAGAATCTGTCATCTCCTTCAGTTATTCCTTTACCTGATAGGTTGAGCAGATTCAAAGGAAAAAGTCCTGTCGTAGGTGTCCATGATATGCAGCGTAATATACAGGAACTCCGTGAAAATTGGAATGCTTTGAGAAGTGGTTCATTACGGTTCCATGGCAATTCATTTCCACCTGGCAGCACAGTTAGTCAAGAAGAAGATTCTAGCTCCTTACCACATCGCAAATTAGATGATTCACATTGTATGGCTGCCACAAGCCTTCAAAAATCCACTGTCCAAGGTGGTCCTTCTAACAAAATGTCCAATGAGAGTGTCTTTAAAGATGTTGACAAGGCTTGGAAAATGATGGACAGGGCAAGGAGGACTCAACTGACTCATCAAAGAACATGCAGCAATTCATTTCAACCTGGCATCACAGTTAGTCAAAAACAAAATTCTAGTTCCGTATCACATTGCAAATCAGATGATTCACATTCTATGGTTGCCACAAGCCTTCAAAAATCCACTGTCCAAGGTGGTCCTTCTAACAAAATGTCAAATGAGAGAGTCTTCAAAGATGTTGGCAAGGCTTGGAAAATGATGGACAGGGCAAAGAGGACTCAACTGACTCATCAAAGAACATGCAGCATTCCACAGGGAGTGGATAAACCCTCATGCAGTGGAGCTAGTAAGATATCAGTTGCACATTGTAATTTCCTAGAACTGAAAGATCAACAGTCCAAAGCATTAGACCTGAGGAATGCCAAAAAAGAGAGACAGTATGACTATTCTAAGCTCGACAAGAATTTGGAAAATCGCTCAACTCTGAAGTTGGAAGAGAAAAGGCAAAGTAGGGTTACACGTGAGGAGTTGATACATGCGAGGGACCATACTACTCATTCAGAAGGATATTGTGAACGTCCACTGTCCGGAAAGGTCCATACTAGTATCCAGGATGTTCCTAGTTGTGAAAATGGAGAGAGAAATGCTGCTGAGGAACAAAGCTCGTCTGCTTGCTTGGTAACTTCAGCAGATTTAGCTTCCTGTCGTGGTAAGTTTGGTATTGTGTTCTCCTCTAATAGGGATGTGGATCTTGTCAATGAAGAAAAGAGATTGGCTAAAAGCTTTGAGGATGGAAGCACAAGAAAAATTGACGAAGCAAAAACTGAGATCCAGTCTCTTGTTAAATTGAATCTCAAGCTCTTAACTAGAGATAAAAAATTAGGTGTTGATACCTTCAAGGTAGTTGCCAGGCAGGCCACCCATACCATCTTGGCTGCTTGCAGTTCTAAGCAGCAAAAGTCTAGTACATCCTCCTCTAGTTCAGTATGTAGCCATGCCGACCATACTCCGCAGTTTCAGAAATCTACTTTAATGCCTAATTGTTGCAGGCAATGCTTTTATGCCTTTGTAAACAATGTTGTCAATTCCATCATGTTGGAGAAAGTGGGTAGCGCTTGA 2067 0.4407 MSSSSSLGSPKKRPKSQVEEEDGVCCGICYAERGVSIAGEIDCCSHYFCFVCIMEWAKHESRCPICRQRFSNVRRLPMHGVFSSSRDVKVPRRDQVYHPHGNVATGPVDSYAEAKCSTCHAGTDEHLLLLCDLCDTASHTYCVGLGYTVPEGDWFCPDCTISRETNTNEESDQQNVAPAAEPSVTIDIFDIVRETGSRVVKRPRKSPLQQNLSSPSVIPLPDRLSRFKGKSPVVGVHDMQRNIQELRENWNALRSGSLRFHGNSFPPGSTVSQEEDSSSLPHRKLDDSHCMAATSLQKSTVQGGPSNKMSNESVFKDVDKAWKMMDRARRTQLTHQRTCSNSFQPGITVSQKQNSSSVSHCKSDDSHSMVATSLQKSTVQGGPSNKMSNERVFKDVGKAWKMMDRAKRTQLTHQRTCSIPQGVDKPSCSGASKISVAHCNFLELKDQQSKALDLRNAKKERQYDYSKLDKNLENRSTLKLEEKRQSRVTREELIHARDHTTHSEGYCERPLSGKVHTSIQDVPSCENGERNAAEEQSSSACLVTSADLASCRGKFGIVFSSNRDVDLVNEEKRLAKSFEDGSTRKIDEAKTEIQSLVKLNLKLLTRDKKLGVDTFKVVARQATHTILAACSSKQQKSSTSSSSSVCSHADHTPQFQKSTLMPNCCRQCFYAFVNNVVNSIMLEKVGSA 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13525g00001 688 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Mupr13525g00001 688 MobiDBLite consensus disorder prediction 261 282 - -
Mupr13525g00001 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 183 IPR013083 -
Mupr13525g00001 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 89 IPR013083 -
Mupr13525g00001 688 Pfam PHD-finger 116 160 IPR019787 -
Mupr13525g00001 688 MobiDBLite consensus disorder prediction 333 389 - -
Mupr13525g00001 688 ProSiteProfiles Zinc finger RING-type profile. 26 67 IPR001841 -
Mupr13525g00001 688 PANTHER F18C1.6 PROTEIN 15 360 - -
Mupr13525g00001 688 SMART ring_2 26 66 IPR001841 -
Mupr13525g00001 688 SUPERFAMILY FYVE/PHD zinc finger 109 161 IPR011011 -
Mupr13525g00001 688 SUPERFAMILY RING/U-box 16 74 - -
Mupr13525g00001 688 MobiDBLite consensus disorder prediction 261 276 - -
Mupr13525g00001 688 ProSiteProfiles Zinc finger PHD-type profile. 113 162 IPR019787 -
Mupr13525g00001 688 SMART PHD_3 115 160 IPR001965 -
Mupr13525g00001 688 MobiDBLite consensus disorder prediction 334 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13525g00001 Mupr-Chr13525 22579 30822 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13525g00001 107 163 C2H2 Transcription Factor Family AT3G01460 37.931 7.55e-09 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mupr13525g00001 PHD 8.3e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13525g00001 - - gmx:100808541 553.518