Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13520g00001 ATGTTGAAGGAAGGCACCAACATGGTTGGTGGTGGCGCCAACAACTGGTCACGTGTTTGCAACACATGCCAGTCAACAGCCTGCATGGTGTACTGCCATGCAGACTCAGCATACCTGTGTTCATCCTGCGACACTCCGGTTCATGCGACTAACTATGTGGCCTCGAGGCCCGAGCATGTATGGATCTGTGAAGCGTGTGAACGTGCTCCAGCAGCGTTTCTCTGCAAAGCAGACGCCGCCTCTCTTTGCTCTTCTTGCGACGCTGACATTCACTCCGCCAACCCCCTCGCGAGTCGCCACCACCGCGTGCCGATTCTCCCCATTTCCAAACCAATCTTCGAGGAACACGAACATGAAGAAGAGGAAGAGGTTGTTGATAAGTTTGAGGATGAGGTTGAAGCTGCTTCGTGGTTGTTGCCACATCCTATGAAGAACAACGATGAGGAGGAGGAGAATGGTTTTTTGTTTGGTGATGAGTATTTGGACCTTTTGGATTGGAACACATGTGGTGGTGGTCACAACCAATTTAGCAACGTGTATCAGCACCACCAGCAAATTTATAACACTGTCCCTCACAACTATGCAGTGGTGCCAGTTCAGCTACCACAACATTTTCAACCAAGTTTGGATTTTGACTCCTCAAAAGCTGGGTTCCATTATGATGGTTCTCCTAGTCAAAGTGTTTCAATTTCATCAATGGATATTGGCGTTGTACCAGAATCAACAATAAGCGACATCTCAATGTCCCACTCAAAGTCAATACCAATAGGAACAAGGGACCTATTTCCTCCCCTTCCCATACCTTCACACCTTACACCATTGGACCGAGAGGCCAGAGTCCTAAGATACAAGGAGAAAAAGAAGACAAGAAAGTTTGAAAAGAAAATTAGGTATGCCACAAGGAAGGCCTATGCAGAGACTAGACCCCGCATAAAGGGCCGATTTGCAAAGAGAATTGATGTAGAAGCTGAAGTGGACCAGATGCTCTCCACAGCACTATTCACTGAAGTTGGAGGTGGCAATTTTCCTTCTTTCTAG 1038 0.474 MLKEGTNMVGGGANNWSRVCNTCQSTACMVYCHADSAYLCSSCDTPVHATNYVASRPEHVWICEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPILPISKPIFEEHEHEEEEEVVDKFEDEVEAASWLLPHPMKNNDEEEENGFLFGDEYLDLLDWNTCGGGHNQFSNVYQHHQQIYNTVPHNYAVVPVQLPQHFQPSLDFDSSKAGFHYDGSPSQSVSISSMDIGVVPESTISDISMSHSKSIPIGTRDLFPPLPIPSHLTPLDREARVLRYKEKKKTRKFEKKIRYATRKAYAETRPRIKGRFAKRIDVEAEVDQMLSTALFTEVGGGNFPSF 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13520g00001 345 Pfam B-box zinc finger 61 105 IPR000315 GO:0008270
Mupr13520g00001 345 CDD Bbox1_BBX-like 19 62 - -
Mupr13520g00001 345 ProSiteProfiles Zinc finger B-box type profile. 58 105 IPR000315 GO:0008270
Mupr13520g00001 345 ProSiteProfiles CCT domain profile. 276 318 IPR010402 GO:0005515
Mupr13520g00001 345 Pfam CCT motif 276 318 IPR010402 GO:0005515
Mupr13520g00001 345 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 20 332 IPR045281 GO:0009909
Mupr13520g00001 345 CDD Bbox1_BBX-like 62 105 - -
Mupr13520g00001 345 ProSiteProfiles Zinc finger B-box type profile. 15 50 IPR000315 GO:0008270
Mupr13520g00001 345 SMART bboxneu5 15 55 IPR000315 GO:0008270
Mupr13520g00001 345 SMART bboxneu5 58 105 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13520g00001 Mupr-Chr13520 364 2245 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13520g00001 1 345 C2C2-CO-like Transcription Factor Family AT3G02380 53.186 3.86e-117 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Mupr13520g00001 zf-B_box 9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13520g00001 - K12135 gmx:100782635 524.628