Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13517g00001 ATGGACCTGAGACGAGGCAACACGGTGATTCTGACTACCGATCGAGGACAGTTTGGTCTTTTGGGAAACACAAGACACAGAAACAAGAACCACTTCGCTATGCATTCCCACCCCTCTCCGTCCCATTCCGTTTACCTCCTTTTATTTGTAGCACACAAATCCCCTTTCCTCTTCTTTTCTCAATTTAATTTAGGATTCCTAGGGATTTCTCAATCCCTATTCTCCATGGATGAGGAAGCTCCATCAACTCAATCTCCCCCTCCACTCCAACACCACTCTGCTGATGCGCAATGCGACCCCGACCTTCAGAATCTCCCTTACGCCGGCGCCGGAGACCTCGAGGTCGTCGCCGCGGCTGAACCCGATGCGGCAACGGAGACGGTGGCGGTGGCCGACGAGGGCGCTGAAACGCAAGTGATGGATGTTGAGGGCGAAGAGATAATTGAGGAGAAGGGGAATGAAGGAACGGATGACGTGGCTTTCGAGACGGAGAAGGTGGAAGAGGAAGCGATTTTGGCAATTGACGAGGAAGAGGACGAAGTTGGGGACGGGAAGACAAATGGAGACGCTTTGATTGAAGAAGAAGAAGAAGAGGAAGAACAGCAGCAAGGGGAGGACGAGGAAGAACAAGAAGAAGAGAACCAACAGGGAGAGGAGGAAGAAGATGAAGAACAGCAGCAAGGAGAAGAGGAAGACGTTGATGGTGACGATGGAATTGAAATTACAGAGGAGAAAGATGAGAAGAGTGCAGGTGCTAGTGGTGGGAAGAGGAAGCGCGGTGCTGGGAAGAATGCTAAGGCCTCAGGGAGAGTTGCATCCAGGAAAAAGATGGAGGAGGACGTCTGTTTCATTTGCTTCGACGGAGGTGACCTTGTGCTTTGTGACCGCAGGGGATGCCCCAAGGCTTACCATCCTTCCTGCGTTAATCGTGATGAGGCCTTCTTTCGAGCCAAGGGAAAGTGGAATTGCGGTTGGCATCTTTGCAGCAACTGTGAGAAGAATGCATACTATATGTGCTATACATGTACATTTTCTCTGTGCAAGGGTTGCATCAAAGACGCTGTTATCTTATGTGTTAGGGGAAACAAGGGCTTTTGTGAGACATGCATGAGAACTGTAATGTTGATTGAACAGAATGAGCAGGGAAACAATGTGGGACAAATCGATTTTGATGACAAAAACAGCTGGGAGTATCTCTTCAAGGACTACTACATAGATTTAAAAGAAAAACTATCTCTAACATTTGATGAACTCACTCAAGCTAAAAACCCTTGGAAGGGATCTGATATGCTTCATTCTAAAGAGGAATCCCCAGATGAACTTTTTGATGCCAGTAATGAAAGAGGATCAGATTCAGATAGCTCCTATGAGAATGTAGATTGGAGTCGTTCTAAAAGAAAAAAGGCCAAGAAACGGGCAAAGTCCCGTTCCAAAGAAGGAAATTCATATAGTGCAGTGGCAATGGTTGGTGCTGATGGGCCATCTGGAGATGACAGCTCTGAGTGGGCTTCAAAAGAGCTTTTGGAGTTTGTTATGCACATGAGAAATGGAGATAAATCTGTTTTATCTCAGTTTGATGTGCAGGCTCTTTTGCTAGAGTATATTAAAAGAAATAAGCTTCGGGATCCTCGTCGAAAAAGTCAGATTATTTGTGATGCAAGACTTCAAAATCTGTTTGGTAAACCAAGAGTGGGACATTTTGAAATGTTAAAGCTTCTTGAATCCCATTTCCTTCTAAAAGAGGATTCTCAGGCTGAAGATCTGCAGGGAAGTGTTGTTGACACTGAAATTAGTCATTTAGAAGGTGATGGCAATCCCAATTCATATATGAAAGCTGGCAAAGATAAGAGACGTAAAAATCGTAAAAAGGGTGATGAGAGAGGACTTCAAACTAATGTTGATGATTATGCAGCCATTGATAACCATAATATTAATTTAATTTATCTAAGACGTAATTTAGTGGAAGATCTACTTGAAGATACAGAAAAGTTTCATGACAAAGCTGTTGGTTCTTTTGTGAGAATAAGAATTTCTGGTAATGGTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGTACATGCAAAGCATCAGAGCCATATAAAGTTGGTAAAAGGATGACAGATATCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTAACAATTGATATTATCTCAAATCAGGAGTTCACAGAGGATGAATGCAAGCGTCTCCGCCAAAGCATAAAGTGTGGCCTCATAAATCGGCTAACTGTGGGTGACATTCAGGACAAAGCACTGGTGCTTCAGGCAGTTAGAGTAAAAGATTGGCTAGAAACAGAGATAGTGCGGCTGAGTCATCTCCGTGATAGAGCTAAATGCGTGGAGAAATTGCAGCTTTTGAAAACACCTGAAGAACGTCAACGTAGGTTGGAGGAAATTCCAGAAATACATGTGGATCCAAACATGGATCCAAGTTATGAGTCTGAAGAAGATGAAGATGAAATGGATGATAAAAGACAAGAAAACTACATGAGACCTAGAGGGTCTACTGCCTTTGGAAGGAGGGGGAGAGATATTGTTTCTCCTAGAGGTGGTTCTATTTCAAATGATTCTTGGGGCGGAACGAGGAATTATTCTAATGTGAATCAGGAACTCAGCAGAAATTTGTCTAATAAGGGATTTTCAATCAAAGGTGATAATGCTTCTAATGCTAATGAGGTACTAAATGATGCTCCGATGCACCAGGGAAGAGATAGGGAATCGCAACTAAATAATAGCTGGGACAGGCAAAAGCTGTCTTCAAGCTTGGAAAGTGGTGCTAAAAATATCCAACCATTGGTAACATCTGAGCCTTTCTCTACTGCTGTATTAGAAGCTTCTGTAACACCATCTTCTGCCGGAATAACTCCTCCAGCTGTGAAAATTAATGAAACTGAAAAGATGTGGCATTACCAGGATCCATCCGGAAAAGTTCAGGGACCATTTTCTATGGTCCAGCTACGCAAATGGAGTAACACAGGATACTTTCCTGCTGATTTGAGGATTTGGAGAACCACTGAGAAGCAAGATGATTCTATACTCTTAAAAGATGCCTTAGCAGGGAATTTTTCTAAGGAACCATCAACGGTCGATAAGGCTCAAACAGTGCATGATTTACATTACCCATCCACGTACTCTAGGAAGTCTGCACAACAAGGTATAGAAGGTCAAGTTGGAGAAAGACCAACATTTGATCAAAATAGTGGATCTTGGAATTCACACAGTACACTGGGTTCTCCGGGACAAACCACAGGAGGAAGTTGGAGATCTAAAGATAATATGAATTCTTTAGCAAATAGAACTTCTTCATTGGCAGTTGAGGTCCCCAAGCACCCTGCAAATGGCTGGGGTTCTGATGCTGGTGTTAGAAATGAAGCAACAAATCTTCCTTCACCTACTCCCCAGACTACTCCTGGTGGGACCAATGGGCAGGCCTTTGAAAATAAATGGTCACCAACACCTGTCCAGTTGCCTGGGTCTCTCATAGGAAATTCATTCCCAGGCAGTCATGGAGGTTTGCAGGCATCTGGTGTTGTGCATCCAGAGCATGCTGTACAAAATGCTGAAAAAGGCTTAAATTCACAACCTGGTATTAGTTCAGCTACCACAGATACTACTCAGTTACATCCTCAAGCAACAGTAGTGGCACCTGTTCTGGCTTCAGGGGTTGACATCAAAATGGCAGGTGCAAATATGCAAAACCGGGTTGTGAGTAGCCACAACTCTCATGCTGAAGCTCAAGGGTGGGGTTCTGCTGGGGTTCCAAAGCCAGAACCACAGGCCTGGGGAGGTACTTCATCTCAAAGGATAGAACCAAATAATCCTGCTACTATGCCTGCCCAGCCAGCTTCCCACGGCCCCTGGGGGGATCCCTCGTCTGTCCAGAACACTGCTTCGTTTAACACTGGAAATCCAACTCGGAGTTTATCCACACCTGGATTTATGGGCATGAATACACCTGAGCCTTGGAGACCACCAGCTTCAAGTAGTCAGTCAAACATCACAACTCCATCTCCAGCACCATCCACTATGCCTTGGGCAATGGGCATGCCAGGAAATCAGAATATGAACTGGGGTGGGGGTGTACCTGCCAATATGAACGTAAACTGGATGCCTGCGCAGGTGCCGGCACCTGGAAATTCAAATCCAGGATGGGCTGCTCCTAGTCAGGGGCTACCTCCAGTGAATGCAGTTGGCTGGGTTGGACCTGGTCAAGGACGTTCCCATGTAAATGCGAATGCAGGTTGGGTTGGGCCTGCTCAGGGGCTAGCTCCTGGAAGTGCCAATCCTGGTTGGGCTGCATCGGCCGGAAATCCAGGCATGTGGGGAAGTGAGCAAAGTCATAATGGAGACAGGTTCCCCAACCGAGGGGATCGTGGTGGTACTCATGGTGGAGATTCTGGTTATGGAGGTAAATCTTGGAACAGGCAGTCATCATTTGGCAACGGGGGCAGAGGAGGTTCTTCCAGGCCTTCTTTTGGAGGACAAAGAGGAGTCTGCAAGTATCATGAGAGTGGACATTGCAGGAAGGGGTCTGCTTGTGATTTTCTACACAACACTTAG 4596 0.4528 MDLRRGNTVILTTDRGQFGLLGNTRHRNKNHFAMHSHPSPSHSVYLLLFVAHKSPFLFFSQFNLGFLGISQSLFSMDEEAPSTQSPPPLQHHSADAQCDPDLQNLPYAGAGDLEVVAAAEPDAATETVAVADEGAETQVMDVEGEEIIEEKGNEGTDDVAFETEKVEEEAILAIDEEEDEVGDGKTNGDALIEEEEEEEEQQQGEDEEEQEEENQQGEEEEDEEQQQGEEEDVDGDDGIEITEEKDEKSAGASGGKRKRGAGKNAKASGRVASRKKMEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNRDEAFFRAKGKWNCGWHLCSNCEKNAYYMCYTCTFSLCKGCIKDAVILCVRGNKGFCETCMRTVMLIEQNEQGNNVGQIDFDDKNSWEYLFKDYYIDLKEKLSLTFDELTQAKNPWKGSDMLHSKEESPDELFDASNERGSDSDSSYENVDWSRSKRKKAKKRAKSRSKEGNSYSAVAMVGADGPSGDDSSEWASKELLEFVMHMRNGDKSVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQAEDLQGSVVDTEISHLEGDGNPNSYMKAGKDKRRKNRKKGDERGLQTNVDDYAAIDNHNINLIYLRRNLVEDLLEDTEKFHDKAVGSFVRIRISGNGQKQDLYRLVQVVGTCKASEPYKVGKRMTDILLEILNLNKTEIVTIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKALVLQAVRVKDWLETEIVRLSHLRDRAKCVEKLQLLKTPEERQRRLEEIPEIHVDPNMDPSYESEEDEDEMDDKRQENYMRPRGSTAFGRRGRDIVSPRGGSISNDSWGGTRNYSNVNQELSRNLSNKGFSIKGDNASNANEVLNDAPMHQGRDRESQLNNSWDRQKLSSSLESGAKNIQPLVTSEPFSTAVLEASVTPSSAGITPPAVKINETEKMWHYQDPSGKVQGPFSMVQLRKWSNTGYFPADLRIWRTTEKQDDSILLKDALAGNFSKEPSTVDKAQTVHDLHYPSTYSRKSAQQGIEGQVGERPTFDQNSGSWNSHSTLGSPGQTTGGSWRSKDNMNSLANRTSSLAVEVPKHPANGWGSDAGVRNEATNLPSPTPQTTPGGTNGQAFENKWSPTPVQLPGSLIGNSFPGSHGGLQASGVVHPEHAVQNAEKGLNSQPGISSATTDTTQLHPQATVVAPVLASGVDIKMAGANMQNRVVSSHNSHAEAQGWGSAGVPKPEPQAWGGTSSQRIEPNNPATMPAQPASHGPWGDPSSVQNTASFNTGNPTRSLSTPGFMGMNTPEPWRPPASSSQSNITTPSPAPSTMPWAMGMPGNQNMNWGGGVPANMNVNWMPAQVPAPGNSNPGWAAPSQGLPPVNAVGWVGPGQGRSHVNANAGWVGPAQGLAPGSANPGWAASAGNPGMWGSEQSHNGDRFPNRGDRGGTHGGDSGYGGKSWNRQSSFGNGGRGGSSRPSFGGQRGVCKYHESGHCRKGSACDFLHNT 1531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13517g00001 1531 ProSitePatterns Zinc finger PHD-type signature. 282 342 IPR019786 -
Mupr13517g00001 1531 MobiDBLite consensus disorder prediction 806 877 - -
Mupr13517g00001 1531 FunFam Zinc finger CCCH domain-containing protein 19 639 768 - -
Mupr13517g00001 1531 Pfam SWIB/MDM2 domain 504 577 IPR003121 -
Mupr13517g00001 1531 CDD Bbox1 327 353 - -
Mupr13517g00001 1531 MobiDBLite consensus disorder prediction 193 270 - -
Mupr13517g00001 1531 MobiDBLite consensus disorder prediction 806 822 - -
Mupr13517g00001 1531 SUPERFAMILY GYF domain 969 1030 IPR035445 -
Mupr13517g00001 1531 CDD GYF 977 1032 IPR003169 GO:0005515
Mupr13517g00001 1531 FunFam Zinc finger CCCH domain-containing protein 19 489 584 - -
Mupr13517g00001 1531 MobiDBLite consensus disorder prediction 1072 1105 - -
Mupr13517g00001 1531 MobiDBLite consensus disorder prediction 862 877 - -
Mupr13517g00001 1531 Pfam Plus-3 domain 643 746 IPR004343 GO:0003677
Mupr13517g00001 1531 Gene3D - 640 768 IPR036128 GO:0003677
Mupr13517g00001 1531 FunFam Zinc finger CCCH domain-containing protein 19 979 1036 - -
Mupr13517g00001 1531 Coils Coil 191 227 - -
Mupr13517g00001 1531 FunFam Zinc finger CCCH domain-containing protein 19 271 371 - -
Mupr13517g00001 1531 MobiDBLite consensus disorder prediction 1272 1291 - -
Mupr13517g00001 1531 CDD PHD5_NSD 281 326 - -
Mupr13517g00001 1531 MobiDBLite consensus disorder prediction 428 447 - -
Mupr13517g00001 1531 Gene3D SWIB/MDM2 domain 494 587 IPR036885 -
Mupr13517g00001 1531 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 194 1530 - -
Mupr13517g00001 1531 MobiDBLite consensus disorder prediction 426 479 - -
Mupr13517g00001 1531 MobiDBLite consensus disorder prediction 1247 1353 - -
Mupr13517g00001 1531 ProSiteProfiles SWIB/MDM2 domain profile. 496 579 IPR003121 -
Mupr13517g00001 1531 SMART PHD_3 281 327 IPR001965 -
Mupr13517g00001 1531 SMART swib_2 511 582 IPR019835 -
Mupr13517g00001 1531 Pfam GYF domain 980 1020 IPR003169 GO:0005515
Mupr13517g00001 1531 SUPERFAMILY FYVE/PHD zinc finger 278 332 IPR011011 -
Mupr13517g00001 1531 ProSiteProfiles Zinc finger PHD-type profile. 279 345 IPR019787 -
Mupr13517g00001 1531 MobiDBLite consensus disorder prediction 193 241 - -
Mupr13517g00001 1531 MobiDBLite consensus disorder prediction 1299 1326 - -
Mupr13517g00001 1531 SMART rtf1 638 748 IPR004343 GO:0003677
Mupr13517g00001 1531 MobiDBLite consensus disorder prediction 1054 1105 - -
Mupr13517g00001 1531 MobiDBLite consensus disorder prediction 596 629 - -
Mupr13517g00001 1531 MobiDBLite consensus disorder prediction 1482 1497 - -
Mupr13517g00001 1531 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 373 IPR013083 -
Mupr13517g00001 1531 SMART gyf_5 978 1033 IPR003169 GO:0005515
Mupr13517g00001 1531 MobiDBLite consensus disorder prediction 1122 1162 - -
Mupr13517g00001 1531 ProSiteProfiles Zinc finger C3H1-type profile. 1505 1531 IPR000571 GO:0046872
Mupr13517g00001 1531 MobiDBLite consensus disorder prediction 1438 1508 - -
Mupr13517g00001 1531 SUPERFAMILY Plus3-like 639 767 IPR036128 GO:0003677
Mupr13517g00001 1531 MobiDBLite consensus disorder prediction 1334 1353 - -
Mupr13517g00001 1531 ProSiteProfiles GYF domain profile. 977 1031 IPR003169 GO:0005515
Mupr13517g00001 1531 CDD SWIB-MDM2_like 502 577 - -
Mupr13517g00001 1531 Gene3D - 978 1037 IPR035445 -
Mupr13517g00001 1531 SUPERFAMILY SWIB/MDM2 domain 501 578 IPR036885 -
Mupr13517g00001 1531 MobiDBLite consensus disorder prediction 1135 1162 - -
Mupr13517g00001 1531 ProSiteProfiles Plus3 domain profile. 638 771 IPR004343 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13517g00001 Mupr-Chr13517 5070 16523 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13517g00001 279 366 PHD Transcription Factor Family AT5G36670 32.000 6.57e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Mupr13517g00001 Plus-3 3.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13517g00001 - - gmx:100815079 2329.67