LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr1350g00006	ATGGCGAAAGAGCTTCTGCAGCTTCCTCTGCTGCTGCAGCTGCTTCTCCAACAACGGCGTCGTTTTGCACTTCCTCTGCCAATGTCGAAGCTCGCATTCTCAGATTCAGTTGAACATGCTTGTCCTTTGTATCCAGGAGAGGGAAATCTCTTGCTAATTGATGACATGGAGCAGTATGAAATACTTGAACAAATTGGAAAAGGTGCTTTTGGTTCTGCTCTTCTTGTGAAGCATAAGCATGAGAAGAAAAAATATGTGCTGAAGAAGATTCGCCTTGCTCGCCAAACTGAGCGCTCTCGTAGGTCTGCACACCAGGAGATGGAGCTCCTGTCCAAATTAAGAAATCCATTTATTGTGGAGTATAAAGATTCATGGGTAGAAAAGAAACTGTGTAAGTGGCTTGTTCAACTTCTTATGGCACTTGATTACTTGCATGTGAACCACATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCATGACATACGCCTTGGTGATTTTGGACTTGCCAAAATGTTGACTTCAGATGATCTAACTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCAGATATACCTTATGGCTCTAAATCAGATATTTGGTCGTTGGGATGTTGTATATATGAAATGACCTCGCTTAAGCCTGCATTCAAAGCATTTGATATACAATCCCTTATTAACAAGATTAACAAGTCCATAGTGGCTCCATTGCCAACAAAATATTCTGGTGCATTTCGAGGTCTTGTTAAGAGCATGCTGCGGAAAAATCCAGAGCTTAGGCCTAGTGCTGCAGAGCTACTTGGGCACCAACATCTTCAACCTTATGTTCTTAAGGTCCATCTCAAAATCAATAGCCCAAGGCGAAGTACATTGCCAGGTCATTGGCCAGATTCCAACTACATGAAGAAAACTAGATTTTTGAAGTCAAAACATGACCCTGTTTCCCACTCTGGGTATAAGTGGCATTCTTTTAGTAATGATCGGACTATAAATCCTAGTGTATCAGGAGCAGAGCAAGATTCTCTGTGCTCTACGCTAGAGATAGACTGTACTCCTGATAATTCAAATAAAAGATTTGCTGAACTTAGTGTTGGAGACAACCATGATGTGAAGTCACTCCATAAGCCAGCTGTTTCCAGAACTTCTAGTAATGCCAAGACTCCTAGACTAACCGCATCAAAAGCTTCTGCCACCCCCAAGAAATCAATGGTACCCTCAAAGAATTATAAGACGCTTCCTGTTTCACCCATTACGAAACAACCTGTCCATTCAACTCGCAGAGCATCATTGCCGTTGCCAAGAAGTTGTACCATTCAGCAGCCTCCTCGCAGGCCCAATATTGGTTTACTTGAGCATGTAAATTCGCCCAATATTTCAGTTAACTCTCCCCGTATTGATAGGATAGCAGAATTCCCATTAGCATCATATGAAGATCAATTATTTCCCGTCAATAGATCTCCGCCAAACTCAGCACAGGGTTCCTCAGGCTCCCCTCCTTGTGGCAATGATTCAACTTTGATAGACAAATGCACAATCAAGGTATGTGACACAGCCTATGTTAGGCCAGGTTGTAGGGATGCTTGGCAGGGAATTAAGCGCAGCATGTTCAAGGAAAACAATGAGGACAAAAGTGGATCATCTGATCAAAATGCAACTGCTGGAGCATCAAGCCACAACTCTTCAGATTTGTGCCGTCGACAGTTTGATACTTCGTCATTCCAACAAAGGGCTGAGGCCTTAGAAGGGTTGCTTGAATTTAGTGCAAGATTACTACAGCAGGAAAGGTACGGAGAACTTGGAGTTTTATTAAAACCATTTGGGCCAGGTAAAGCTTCCCCAAGGGAAACTGCTATTTGGTTGAGCAAGAGTTTCAAAGTGAACACTTTCAACCGGGAACAATCCACTTAA	1938	0.4278	MAKELLQLPLLLQLLLQQRRRFALPLPMSKLAFSDSVEHACPLYPGEGNLLLIDDMEQYEILEQIGKGAFGSALLVKHKHEKKKYVLKKIRLARQTERSRRSAHQEMELLSKLRNPFIVEYKDSWVEKKLCKWLVQLLMALDYLHVNHILHRDVKCSNIFLTKDHDIRLGDFGLAKMLTSDDLTSSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSLKPAFKAFDIQSLINKINKSIVAPLPTKYSGAFRGLVKSMLRKNPELRPSAAELLGHQHLQPYVLKVHLKINSPRRSTLPGHWPDSNYMKKTRFLKSKHDPVSHSGYKWHSFSNDRTINPSVSGAEQDSLCSTLEIDCTPDNSNKRFAELSVGDNHDVKSLHKPAVSRTSSNAKTPRLTASKASATPKKSMVPSKNYKTLPVSPITKQPVHSTRRASLPLPRSCTIQQPPRRPNIGLLEHVNSPNISVNSPRIDRIAEFPLASYEDQLFPVNRSPPNSAQGSSGSPPCGNDSTLIDKCTIKVCDTAYVRPGCRDAWQGIKRSMFKENNEDKSGSSDQNATAGASSHNSSDLCRRQFDTSSFQQRAEALEGLLEFSARLLQQERYGELGVLLKPFGPGKASPRETAIWLSKSFKVNTFNREQST	645

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr1350g00006	645	SUPERFAMILY	Protein kinase-like (PK-like)	53	300	IPR011009	-
	Mupr1350g00006	645	CDD	STKc_Nek	58	282	-	-
	Mupr1350g00006	645	MobiDBLite	consensus disorder prediction	386	452	-	-
	Mupr1350g00006	645	MobiDBLite	consensus disorder prediction	490	512	-	-
	Mupr1350g00006	645	Gene3D	Transferase(Phosphotransferase) domain 1	97	119	-	-
	Mupr1350g00006	645	PANTHER	SERINE/THREONINE-PROTEIN KINASE NEK	127	595	-	-
	Mupr1350g00006	645	Gene3D	Transferase(Phosphotransferase) domain 1	128	327	-	-
	Mupr1350g00006	645	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	149	161	IPR008271	GO:0004672\|GO:0006468
	Mupr1350g00006	645	ProSitePatterns	Protein kinases ATP-binding region signature.	65	88	IPR017441	GO:0005524
	Mupr1350g00006	645	MobiDBLite	consensus disorder prediction	548	573	-	-
	Mupr1350g00006	645	Gene3D	Phosphorylase Kinase; domain 1	59	127	-	-
	Mupr1350g00006	645	ProSiteProfiles	Protein kinase domain profile.	59	282	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mupr1350g00006	645	MobiDBLite	consensus disorder prediction	555	573	-	-
	Mupr1350g00006	645	FunFam	Probable serine/threonine-protein kinase nek1	55	143	-	-
	Mupr1350g00006	645	SMART	serkin_6	59	282	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mupr1350g00006	645	MobiDBLite	consensus disorder prediction	384	458	-	-
	Mupr1350g00006	645	MobiDBLite	consensus disorder prediction	492	512	-	-
	Mupr1350g00006	645	Pfam	Protein kinase domain	127	281	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr1350g00006	Mupr-Chr1350	36810	42950	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr1350g00006	65	283	MAP Kinase Kinase Kinase	AT1G53570	30.952	5.50e-31	125

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Mupr1350g00006		Pkinase	2.6e-40	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr1350g00006	K08857		-	gmx:100796019	1066.6