Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1350g00004 ACATTGACCGGGGACCTGTTCCTTTTTCAGCAAATACCATCATCTTTTACCAATTTCTTCAATGGAATCACACCATGCAAGGGCACCCTTGTAGATCACGATAGAAAATCTTGGGATGTTTCCTTGGAGAAAATCGAGGGTCGCTTGGTTTTTAAAAATGGGTGGCAACAATTTGCCAGGGAGAAAGATTTAGAAGAAGGGGACTTCTTGGTTTTTCAGTATGATGGCATGTCTACGTTTAATGTGAAGATATTTTCCAAAACTGGATGCAGGAAAGTGGTTGCACCTGCAAGTTGTGAAAAAAATGTTCCCCCTTTGAATTTGGATGAAGATTCTGATCTGCGTCGTATGAAAATCCAGCGCGGTCGTAAACGGAAACCCTCACCACTAAGTCTCGAAATAAATGGGAAATTAGAGTTAGAAGGTACAAGTCCATTCGAAGGTGCCCGGTGCAAATCAGAAGTAGTTAGTGAAGAAAATGATAACCACTATGAGAAGAAACCTCGCCCGACGAATTGTGTTTCATTGCAGAATCCACATTTTCAGATAACTTTTGATGCTGCCTGGAAACTGAAAAAAGTGGAAGTTCCTAGAAGAGTGCTGAGGAAAATGAATATCAAGCTGATGCAGAAGATAAGTCTGAGAGATGAGAATGACAAAGTATGGCCGGTGACGATCACTGCCAGCAGGAACGGCCGGAACGGCCAGCGTCAGTTTTTGGGAGCTGGATGGTCTGATTTTCAACGGAGTAACAATATTCAAGAAGGCAACCAATGTGATTTTCAGTTTATTGTCGACGAAGCAAACGTAGTCCAAGAACTGCTTGTGCGCGTTCGTTCAAATTGCCCAATGCGTTGGGTGGACCAAGATAACGAA 876 0.4292 TLTGDLFLFQQIPSSFTNFFNGITPCKGTLVDHDRKSWDVSLEKIEGRLVFKNGWQQFAREKDLEEGDFLVFQYDGMSTFNVKIFSKTGCRKVVAPASCEKNVPPLNLDEDSDLRRMKIQRGRKRKPSPLSLEINGKLELEGTSPFEGARCKSEVVSEENDNHYEKKPRPTNCVSLQNPHFQITFDAAWKLKKVEVPRRVLRKMNIKLMQKISLRDENDKVWPVTITASRNGRNGQRQFLGAGWSDFQRSNNIQEGNQCDFQFIVDEANVVQELLVRVRSNCPMRWVDQDNE 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1350g00004 292 ProSiteProfiles B3 DNA-binding domain profile. 179 279 IPR003340 GO:0003677
Mupr1350g00004 292 SUPERFAMILY DNA-binding pseudobarrel domain 175 265 IPR015300 -
Mupr1350g00004 292 SMART B3_2 1 88 IPR003340 GO:0003677
Mupr1350g00004 292 SMART B3_2 181 282 IPR003340 GO:0003677
Mupr1350g00004 292 ProSiteProfiles B3 DNA-binding domain profile. 1 88 IPR003340 GO:0003677
Mupr1350g00004 292 Pfam B3 DNA binding domain 191 267 IPR003340 GO:0003677
Mupr1350g00004 292 Pfam B3 DNA binding domain 12 87 IPR003340 GO:0003677
Mupr1350g00004 292 CDD B3_DNA 12 86 IPR003340 GO:0003677
Mupr1350g00004 292 CDD B3_DNA 179 264 IPR003340 GO:0003677
Mupr1350g00004 292 SUPERFAMILY DNA-binding pseudobarrel domain 9 90 IPR015300 -
Mupr1350g00004 292 PANTHER B3 DOMAIN-CONTAINING 11 266 - -
Mupr1350g00004 292 Gene3D - 173 278 IPR015300 -
Mupr1350g00004 292 Gene3D - 7 90 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1350g00004 Mupr-Chr1350 24877 26146 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1350g00004 12 280 B3 DNA Binding Superfamily AT5G66980 30.897 1.26e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mupr1350g00004 B3 2.3e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1350g00004 - - ccaj:109795839 395.201