Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13498g00001 ATGGAGCGGTACGGCCGGCCCAGCGAAGGGTCGCAGTCTGATCCGCCGCCAGAATGGACCGTGGCCGGCGGCGACACCGGCCTGGAAGAGTCCTCGTGGCAACTGGGATTAGCCGGTGCCGAATCGTACCCTCTGCGTCCCGATGAGGCCGATTGTATCTACTATTTGAGGACGGGTTTTTGCGGTTACGGCACACGGTGTCGTTTCAACCATCCTCGTGACCGTGCTGCTGTTGTTGGAGCTGCGGCGAGGACTGGAGGGGAGTTTCCAGAGCGCGTGGGACAGCCTGTGTGCCAGTACTATATGAGGACGGGATCGTGCAAATTTGGTGCATCCTGCAAGTACCACCATCCTAGGCAGGCGGCAGGCACTGCTACCCCTGTGCCACTAAATTATTATGGATATCCATTGCGAGTGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACTGGACAGTGCAAGTTTGGTGCGACTTGTAAATTCCATCATCCACAGCCTGCTGGTGTCCAAGTTCTAGCACCATCACCAGTTACCCCAGTTTCCCCTCTGCCTGTACCTGTACCTTCACCAATGTATTCAACTGTACAGCCCCCATCTGGTCCTTCGTCGCAACAATATGGTGTACTTGTTGCAAGGCCATCTATGCTACCTGGCTCAGTAGTCCAGGGTCCCTATGGACCTATGGTAGTGTCCCCTGCCATGGTCCCTTTTTCAGGCTGGGGTCCTTATCAGGCTCCTGCAACAAACCCTGTACTTCCATCTAGCACTACGTCTAATGTTGGTTCAACACAGCTTTATGGGATAACCCAGCTACCTTCACCGGCCGCTTCTTATACTGGACCTTATCAATCTTCTGGTTCCTCAATTGGTCCTTCAGGTGCAAGTCAGAAGGAGCATCCATTTCCAGAAAGACCTGACCAACCGGAATGTCATTATTACATGAAAACAGGGGAGTGTAAATTTGGTCCATCATGTAGATATCATCATCCACCAGACAAGAGTGCACCAAAAGCAAATGTAATCCTTAGTCCTGTGGGTCTTCCTCTGCGTCCGGGGGCACCACCTTGCACTCATTATACCCAGCGTGGTGTTTGTAAGTTTGGTTCTGCATGCAAATTCGATCATCCTATGGGATCACTGAGTTATAGTCCATCTGCCTCTTCCCTGGCTGACATGCCAGTTGCACCCTATCCTGTGGGTTCCTCAATTGGTACTCTTGCCCCATCATCCTCATCATCAGAGTTGCGGCCTGAACTTGGTGCAGGATCCAGCAAGGAGTCGGTTTCATCCAGAATGTCTTCAATGAGCACATCAACTGGATCAGTTGGCTTGACCTTGTCAAGCGTTGGACCCATTTCTCACTCAAGTACCCAACCATCTGCTCAGAGTTCTAGTTCTTCAGCAACTACCAGTGCTACCACAAGTAGCACTCCGGCCATCGTTACTCAAGGAGGTTCTCAAATA 1464 0.5143 MERYGRPSEGSQSDPPPEWTVAGGDTGLEESSWQLGLAGAESYPLRPDEADCIYYLRTGFCGYGTRCRFNHPRDRAAVVGAAARTGGEFPERVGQPVCQYYMRTGSCKFGASCKYHHPRQAAGTATPVPLNYYGYPLRVGEKECSYYVKTGQCKFGATCKFHHPQPAGVQVLAPSPVTPVSPLPVPVPSPMYSTVQPPSGPSSQQYGVLVARPSMLPGSVVQGPYGPMVVSPAMVPFSGWGPYQAPATNPVLPSSTTSNVGSTQLYGITQLPSPAASYTGPYQSSGSSIGPSGASQKEHPFPERPDQPECHYYMKTGECKFGPSCRYHHPPDKSAPKANVILSPVGLPLRPGAPPCTHYTQRGVCKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELGAGSSKESVSSRMSSMSTSTGSVGLTLSSVGPISHSSTQPSAQSSSSSATTSATTSSTPAIVTQGGSQI 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13498g00001 488 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Mupr13498g00001 488 MobiDBLite consensus disorder prediction 406 488 - -
Mupr13498g00001 488 SUPERFAMILY CCCH zinc finger 49 75 IPR036855 GO:0046872
Mupr13498g00001 488 Gene3D - 46 124 - -
Mupr13498g00001 488 Gene3D - 125 175 - -
Mupr13498g00001 488 SUPERFAMILY CCCH zinc finger 139 166 IPR036855 GO:0046872
Mupr13498g00001 488 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872
Mupr13498g00001 488 SUPERFAMILY CCCH zinc finger 95 120 IPR036855 GO:0046872
Mupr13498g00001 488 Gene3D - 303 381 - -
Mupr13498g00001 488 MobiDBLite consensus disorder prediction 1 26 - -
Mupr13498g00001 488 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Mupr13498g00001 488 SUPERFAMILY CCCH zinc finger 354 380 IPR036855 GO:0046872
Mupr13498g00001 488 MobiDBLite consensus disorder prediction 277 294 - -
Mupr13498g00001 488 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872
Mupr13498g00001 488 PANTHER PROTEIN PHOSPHATASE RELATED 38 412 - -
Mupr13498g00001 488 SUPERFAMILY CCCH zinc finger 307 333 IPR036855 GO:0046872
Mupr13498g00001 488 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Mupr13498g00001 488 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 353 377 IPR000571 GO:0046872
Mupr13498g00001 488 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Mupr13498g00001 488 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 331 IPR000571 GO:0046872
Mupr13498g00001 488 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Mupr13498g00001 488 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Mupr13498g00001 488 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Mupr13498g00001 488 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Mupr13498g00001 488 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Mupr13498g00001 488 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Mupr13498g00001 488 SMART c3hfinal6 140 165 IPR000571 GO:0046872
Mupr13498g00001 488 MobiDBLite consensus disorder prediction 277 307 - -
Mupr13498g00001 488 FunFam CCCH type zinc finger protein 302 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13498g00001 Mupr-Chr13498 8040 12722 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13498g00001 1 449 C2H2 Transcription Factor Family AT5G18550 57.267 6.23e-157 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mupr13498g00001 zf-CCCH 1.6e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13498g00001 - - gmx:100789405 822.387