Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13489g00002 ATGAAATATCCAGTAGCCTGGGGTCTTTCTGAAGAAGAAGTCAGAGCAGCAGCAGCCTGTGCTGGAGAGGAAGTGATGATTAGAAATCGTTTTATGGAGATGAATGCTCCTCGTGACAGTTCATCTGTCAGCAAGTATTACCATCTTGCTCATGCTGTGAGTGAGAAGGTTGTAAGTCAACCATCAATGTTACGGGCTGGAACACTGAGAGACTATCAGCTTGTTGGTTTGCAATGGATGCTTTCTTTGTATAACAACAAATTAAATGGAATTTTAGCGGATGAGATGGGTCTTGGCAAAACTGTACAGGTTATGGCATTAATTGCCTACTTGATGGAGTTTAAAGGAAACTATGGCCCACATCTTATAATAGTCCCAAATGCTGTTATGGTTAACTGGAAGGTGAGCTTTCAACTCTTCCATTTCACTGATATTTTCTCTAGTGAGTTGCATACTTGGTTACCATCTGTGTCATGCATTTTTTATGCTGGAGGGAAGGATTACCGGTCAAAATTATATTCTCAAGAGATTTTGGCTATGAAATTTAATGTCCTTGTGACTACTTATGAGTTCATCATGTATGACCGGTCAAGGCTTTCAAAAATTGATTGGAAGTATATCATAATTGATGAAGCACAAAGAATGAAGGATAGAGATTCAGTTCTAGCTCGTGATCTTGATAGATATCGTTGTCAGAGACGCCTGCTTCTGACAGGAACACCTTTACAGAATGATTTGAAGGAACTGTGGTCGCTTTTAAATTTACTTCTCCCTGAGGTTTTTGACAATAAGAAAGCCTTTAATGATTGGTTCTCAAAGCCATTTCAAAAGGAAGTTTCCACTCAAAATACAGAGGATGATTGGCTTGAGACTGAGAAAAAAGTTATCATTATCCACCGCTTACATCAGATTCTTGAGCCTTTCATGCTCAGGCGTCGAGTTGAAGATGTCGAGGGTTCACTACCACCAAAGATCTCTGTAGTGTTACGATGTAAGATGTCAGCTGTCCAGAGTGCCATTTATGACTGGGTCAAATCAACTGGTACCCTTCGTCTTGATCCCGAGGGTGAGAATTTGAAGATTCAAAAGAATCCTCTCTACCAGGCCAAACAGTACAAAACTTTAAATAACAGATGTATGGAGCTACGTAAAACTTGCAATCATCCTTATCTTAATTACCCATTACTTAGTGAATTATCTACAGATTTAGTTGTAAAATCTTGTGGGAAATTGTGGATCCTGGATAGGATCCTTATAAAGCTTCAAAGAACTGGTCATCGAGTTTTGCTGTTTAGTACCATGACAAAACTCCTAGACATCTTGGAAGATTACCTGAATTGGCGAAGACTTGTGTACAGAAGAATTGATGGGACAACTAATTTGGATGACCGAGAATCAGCTATAATGGACTTTAATGGCCCTGATTCAGACTGTTTCATCTTCTTGCTTAGTATACGAGCTGCTGGGAGAGGCCTTAACCTTCAGTCTGCTGACACAGTTGTCATTTATGATCCTGACCCAAACCCTAAAAATGAGGAGCAGGCTGTGGCCAGAGCTCATCGTATTGGGCAGAAAAGAGAAGTCAAAGTTATCTACATGGAAGCTGTTGTTGACAAAATCTCAAGCCATCAGAAAGAGGATGAACTGAGAAGTGGGGGCAGTGTTGATATGGAGGATGAACTTGTGGGTAAGGATCGCTATATAGGATCCATTGAGAGCCTCATAAGGAACAATATTCAACAGTATAAGATAGATATGGCTGATGAGGTTATTAACGCTGGACGTTTTGATCAAAGGACAACACATGAAGAGAGGCGTTTGACTTTAGAGACATTATTACATGATGAAGAAAGGTATCAAGAAACTGTCCATAATGTTCCTTCTCTTCAGGAGGTAAATCGCATGATTGCTAGGAGTGAAGAGGAAGTTGAATTGTTTGATCAAATGGATGAAGAACTGGATTGGCCTGAGGACATGATGCAACATGATGAGGTGCCTGAGTGGCTTCGAGCCAATACAAGAGAAGTGAATGCTGCTATTGCTGCTTTATCTAAAAGACCATCAAAGAACACTTTATTGGGTGGTAGTGTTGCCATTGAATCCAGTGAGGTGGGTTCTGAAAGGAGAAGGGGACGGCCCAAGGGGAAAAAGCATCCTAATTATAAAGAGTTGGAAGATGAAAATGGAGAATATTCTGAAGCAAGCTCTGAAGACAGAAATGGATATTCTGCACAAGAAGAAGGGGAAATTGGGGAGTTTGAAGACGATGGGTATAGTGGGGCTGATGTAAATCGATTGGGAGAAGATGGTCTAACTTTTGAAGCTGGATATGAAATTCCACGTTCTTCAGAAAGTGCAAGAAATAATCATGTGGTTGAAGAAGCTGGTTCCTCAGGATCATCCTCCGACAGTCAAAGATTGACACAGACAGTGTCACCATCAGTTTCTTCCCAGAAATTTGGTTCCCTCTCTGCATTGGATTGCAGGCCAAACTCCATTTCAAAAAGGATGGCAGATGAGTTAGAGGAGGGGGAAATTGCAGTATCTGGTGATTCTCACATGGATCATCAACAGTCGGGAAGTTGGATTCATGATCGCGATGAGGGTGAAGATGAACAAGTTTTGCAGAAACCCAAGATTAAGCGTAAACGTAGTCTTCGTGTTCGTCCCCGTGGTCTTGCCGTGGAAAGGCATGAGGACAAGTCTGGCAGTGAGATGATATCTCTTCAACGTGGAGAATCATCTCTTTTGGCAGACTATAAATATCAAATGCAAACAAGGATTGATCCGGAATCAAAACCATTTGGAGACTCCAGTGCCAGCAAGCATGATAAGAATGAATCATCATTAAAAAATAAGCAAAATTTGCCTTCAAGGAAAGTAGCTAATACATCCAAATTACAGGGATCACCTAAGTCTAATCGTTTGAATTGCACATCTGCTCCTTCAGAGGATGGCGCCGAACACCCTAAAGAAAGTTGGGAGAGGAAGTCTCTGAATCCAAATGGATCTTCAGTTCATGGCACAAAGATGACTGAGATCATCCAGAGAGGGTGCAAAAATGTAATTAGCAAGCTCCAAAGAAGAATAGACAAGGAAGGCTATCAAATTGTACCTTTGCTAACAGATTTGTGGAAGAGGATTGAGAATTCTGGGTACGCAGGTGGATCTGGGAACAATCTGTTGGATTTACGGAAGATTGACCAGCGGATTGATAGAATGGATTATAGCGGAGTAATGGAGCTTGTGTTTGATGTACAGTTCATGTTGAGGGGTGCAATGAATTTCTATGGATACTCATATGAGGTGAGATTTCTTATCCGTGTTATGTATAAATTGATGGAAGCATACACCGACTTGTATTTGGAAAATTTATTGGTAAGATCCGAAGCAAGGAAAGTTCATGATCTCTTCTTTGACATCTTGAAAATTGCATTTCCGGATACAGACTTTGGAGAAGTAAGAGGTGCACTTTCTTTATCAAGCCAAAATCCTGCCAACGTTGCAGCATCCACAAGGCAAGTGACAGTTGGCTCAGGGAAAAGGCACAGAGCAACAAACGATGTGGAAACCGATCCATGCCCGTTACAAAAGCCGCCACAAAGTGGATCGGCTTCTAACGGGGAAAGTGGCAGGTTCAAAGGGAAGGACTCAAGAGGCGGCAGCGGTGGGGGTGGGAGTGGGCGCGAGCAACCGCTTACTCATCCAGGTCAGTTGGTTGTGTGCAAGAAGAAAAGAAATGACAGGGAAAAGTCATTGGGGAAGGGTAGGAGTGGATCATCAGCTGCTCCTGTTTCTCCACCTAGTGCTATAAGAAGTTCAGGTTCAACCCCAAAGGATGCTAAACTGCCTCTGCCTCACCAGGGTTGGGGTACCCAGCCTTCTCAACACTCAAATGGCTCACTTGGTTGGGCAAATCCTGTAAAGCGTTTGAGGACAGATTCTGGGAAGAGGAGACCAAGCCATATGTAG 3972 0.4222 MKYPVAWGLSEEEVRAAAACAGEEVMIRNRFMEMNAPRDSSSVSKYYHLAHAVSEKVVSQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVMVNWKVSFQLFHFTDIFSSELHTWLPSVSCIFYAGGKDYRSKLYSQEILAMKFNVLVTTYEFIMYDRSRLSKIDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNKKAFNDWFSKPFQKEVSTQNTEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKISVVLRCKMSAVQSAIYDWVKSTGTLRLDPEGENLKIQKNPLYQAKQYKTLNNRCMELRKTCNHPYLNYPLLSELSTDLVVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEDYLNWRRLVYRRIDGTTNLDDRESAIMDFNGPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKISSHQKEDELRSGGSVDMEDELVGKDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHNVPSLQEVNRMIARSEEEVELFDQMDEELDWPEDMMQHDEVPEWLRANTREVNAAIAALSKRPSKNTLLGGSVAIESSEVGSERRRGRPKGKKHPNYKELEDENGEYSEASSEDRNGYSAQEEGEIGEFEDDGYSGADVNRLGEDGLTFEAGYEIPRSSESARNNHVVEEAGSSGSSSDSQRLTQTVSPSVSSQKFGSLSALDCRPNSISKRMADELEEGEIAVSGDSHMDHQQSGSWIHDRDEGEDEQVLQKPKIKRKRSLRVRPRGLAVERHEDKSGSEMISLQRGESSLLADYKYQMQTRIDPESKPFGDSSASKHDKNESSLKNKQNLPSRKVANTSKLQGSPKSNRLNCTSAPSEDGAEHPKESWERKSLNPNGSSVHGTKMTEIIQRGCKNVISKLQRRIDKEGYQIVPLLTDLWKRIENSGYAGGSGNNLLDLRKIDQRIDRMDYSGVMELVFDVQFMLRGAMNFYGYSYEVRFLIRVMYKLMEAYTDLYLENLLVRSEARKVHDLFFDILKIAFPDTDFGEVRGALSLSSQNPANVAASTRQVTVGSGKRHRATNDVETDPCPLQKPPQSGSASNGESGRFKGKDSRGGSGGGGSGREQPLTHPGQLVVCKKKRNDREKSLGKGRSGSSAAPVSPPSAIRSSGSTPKDAKLPLPHQGWGTQPSQHSNGSLGWANPVKRLRTDSGKRRPSHM 1323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13489g00002 1323 MobiDBLite consensus disorder prediction 847 886 - -
Mupr13489g00002 1323 Gene3D - 36 311 IPR038718 -
Mupr13489g00002 1323 MobiDBLite consensus disorder prediction 778 826 - -
Mupr13489g00002 1323 FunFam ATP-dependent helicase BRM 322 532 - -
Mupr13489g00002 1323 MobiDBLite consensus disorder prediction 951 981 - -
Mupr13489g00002 1323 MobiDBLite consensus disorder prediction 997 1011 - -
Mupr13489g00002 1323 CDD SF2_C_SNF 408 533 - -
Mupr13489g00002 1323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 312 IPR027417 -
Mupr13489g00002 1323 Pfam Helicase conserved C-terminal domain 412 523 IPR001650 -
Mupr13489g00002 1323 MobiDBLite consensus disorder prediction 1197 1211 - -
Mupr13489g00002 1323 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 413 590 IPR001650 -
Mupr13489g00002 1323 FunFam ATP-dependent helicase BRM 60 321 - -
Mupr13489g00002 1323 MobiDBLite consensus disorder prediction 782 826 - -
Mupr13489g00002 1323 MobiDBLite consensus disorder prediction 858 879 - -
Mupr13489g00002 1323 Coils Coil 629 649 - -
Mupr13489g00002 1323 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 316 653 IPR027417 -
Mupr13489g00002 1323 MobiDBLite consensus disorder prediction 1170 1323 - -
Mupr13489g00002 1323 PANTHER SNF2/RAD54 HELICASE FAMILY 42 855 - -
Mupr13489g00002 1323 MobiDBLite consensus disorder prediction 891 906 - -
Mupr13489g00002 1323 MobiDBLite consensus disorder prediction 701 746 - -
Mupr13489g00002 1323 Gene3D - 318 546 IPR027417 -
Mupr13489g00002 1323 Pfam SNF2-related domain 72 391 IPR000330 GO:0005524|GO:0140658
Mupr13489g00002 1323 MobiDBLite consensus disorder prediction 936 950 - -
Mupr13489g00002 1323 MobiDBLite consensus disorder prediction 928 1011 - -
Mupr13489g00002 1323 MobiDBLite consensus disorder prediction 1262 1276 - -
Mupr13489g00002 1323 MobiDBLite consensus disorder prediction 1241 1255 - -
Mupr13489g00002 1323 MobiDBLite consensus disorder prediction 891 910 - -
Mupr13489g00002 1323 MobiDBLite consensus disorder prediction 1289 1303 - -
Mupr13489g00002 1323 SMART helicmild6 439 523 IPR001650 -
Mupr13489g00002 1323 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 81 259 IPR014001 -
Mupr13489g00002 1323 SMART ultradead3 65 267 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13489g00002 Mupr-Chr13489 23455 31274 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13489g00002 51 564 RAD5 or RAD16-like Gene Family AT1G02670 25.470 5.58e-27 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr13489g00002 SNF2_N 7.1e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13489g00002 K11647 - gmx:100811608 2195.24