Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13488g00001 ATGAGGAATGATGCAGGGTCACCGCAGGGTCCGGTTACGTGCGGGTCGTGGATTCGGAGGCCCGAGAATCTGAATTTGCTGGTGTTGGGAAGGTCCAGACGTGGCGATTCTTGTCCTTCTCTCCTCGAGATTTTCTCCTTCGATCCCAAAACCACTTCTTTGTCTACCTCTCCTCTGGCCACTTATGTGTTGGAAGCAGAGGAAGGTGATCCTGTTGCTATTGCAGTTCACCCTAGTGGGGATGATTTTGTGTGCGCTTTCAGTAATGGTAGCTGCAAATTGTTTGAGTTGTATGGTCGTGAAACAAACATGAAGTTGTTGGCTAAGGAACTGGCTCCCCTACAGGGTATTGGTTTCCAGAAATGCATTACTTTTAGCGTTGATGGGTCTAAATTTGCTGCTGGTGGGTTGGATGGACATTTAAGAATTATGGAGTGGCCTAGTATGCGCATAATTTTGGATGAACCAAGAGCACACAAATCAGTTCGGGATATGGATTTTAGTCTGGACTCAGAGTTTCTAGCTTCAACTTCTACTGATGGTCCAGCCAGAGTCTGGAAGATTGAAGATGGTGTTCCTTTGACTACTTTGTCTCGCAGCTCGGATGAAAAGATTGAATTATGTCGATTTTCTAAGGACGGAACCAAACCATTTTTATTTTGCTCTGTTCAAAAAGGTGATACTTCTGTCACTGCAGTTTATGATATTAGCACATGGAATAAAATTGGGCATAAGAGGCTGATTAGAAAGTCTGCTTCAGTAATGTCCATTAGCCACGATGGGAAATACCTTTCTCTGGGCAGTAAAGATGGAGACATATGTGTAGTTGAAGTAAAGAAAATGCAAATATACCATTATAGCAAAAGACTGCACCTGGGTACAAATATTGCATCGCTTGAGTTCTGTCCCGGAGAAAGGGTTGTACTTACAACCTCAGTAGAATGGGGAGCACTGGTGACTAAGCTGAATGTACCTAAAGATTGGAAAGAGTGGCAGATCTATTTGGTGCTTTTGGGACTATTTTTAGCATCAGCTGTTGCATTTTACATTTTCTTTGAGAATTCTGATTCATTCTGGAACTTTCCCCTGGGCAAAGACCAACCAGCAAGACCAAGGTTTAAACCGGTGTTAGGAGATCCCCAGTCTTATGATGATCAAAATATTTGGGGACCAGTAGATATATTCTCTGTTTTACCCTTCGAAACCGTTGTTACGCGTCATCACAAGAGCCTTCCTCTTTCCTTGGCTGCTTCAGGTTCTATACCAAGTGCTGCAGACACAAGTAGTGCCGATAAGGAGGAGGAAAAGTCAGAGACATATAGTCATGACATGACAAAAGCCATGGGTGCTGTTTTGACTTATAGGCATGAATTAGGAATGAACTACAACTTCATCCGTCCAGACTTGATTGTGGGATCATGCCTACAGACTCCTGAAGATGTTGACAAGTTGCGTAGAATTGGAGTGAAAACTATATTTTGCTTACAACAAGATCCAGACCTTGAATATTTTGGAGTTGATATTGGTGCCATACGAGAATATGCCAAGACATGCAATGACATTCAACACTTGCGTGCTCAGATAAGGGACTTTGATGCATTTGATCTGCGGATGCGGCTTCCAGCTGTAGTTAGCAAACTATACAAGGCAATAACTTCCAACGGAGGTGTAACATATATACATTGCACTGCTGGGCTTGGAAGAGCTCCAGCTGTTGCGAGCAAAAGGATGTGCTTTCCGAAACTGGATGCCATTAAAAGTGCAACAGCTGATATTCTTACAGGCCTCAGTAAGAAGCCTGTCACTTTGTCATGGGAAGACAGCAATTGCTCTACTGTGGAAATTTCAGGACTAGATATTGGATGGGGGCAGAGAATACCCCTAGATTTTGATGACATAGAGGGTTCGTGGTTTCTTAAGAGGGAATTGCCTGAAGGACTATATGAGTACAAGTACATTGTTGATGGGGAATGGACATGCAATAAAGATGAGCTTGTAACCTCTCCCAACAAAGATGGCCATGTCAACAATTTTATTCAAGTCCTTGATGATACCAGCAGTGCTCGTGCCTCCCTTCGGAAAAGATTGACTGGTGATGATCCTGATCTCACAACGGATGAACGACTGAGAATAAAGGAGTTTCTTGAAGCTAGCCCTGACGAGGATCAGTGA 2172 0.4337 MRNDAGSPQGPVTCGSWIRRPENLNLLVLGRSRRGDSCPSLLEIFSFDPKTTSLSTSPLATYVLEAEEGDPVAIAVHPSGDDFVCAFSNGSCKLFELYGRETNMKLLAKELAPLQGIGFQKCITFSVDGSKFAAGGLDGHLRIMEWPSMRIILDEPRAHKSVRDMDFSLDSEFLASTSTDGPARVWKIEDGVPLTTLSRSSDEKIELCRFSKDGTKPFLFCSVQKGDTSVTAVYDISTWNKIGHKRLIRKSASVMSISHDGKYLSLGSKDGDICVVEVKKMQIYHYSKRLHLGTNIASLEFCPGERVVLTTSVEWGALVTKLNVPKDWKEWQIYLVLLGLFLASAVAFYIFFENSDSFWNFPLGKDQPARPRFKPVLGDPQSYDDQNIWGPVDIFSVLPFETVVTRHHKSLPLSLAASGSIPSAADTSSADKEEEKSETYSHDMTKAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRRIGVKTIFCLQQDPDLEYFGVDIGAIREYAKTCNDIQHLRAQIRDFDAFDLRMRLPAVVSKLYKAITSNGGVTYIHCTAGLGRAPAVASKRMCFPKLDAIKSATADILTGLSKKPVTLSWEDSNCSTVEISGLDIGWGQRIPLDFDDIEGSWFLKRELPEGLYEYKYIVDGEWTCNKDELVTSPNKDGHVNNFIQVLDDTSSARASLRKRLTGDDPDLTTDERLRIKEFLEASPDEDQ 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13488g00001 723 MobiDBLite consensus disorder prediction 419 440 - -
Mupr13488g00001 723 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 538 572 IPR000387 GO:0016311|GO:0016791
Mupr13488g00001 723 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 406 573 - -
Mupr13488g00001 723 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 459 573 IPR029021 -
Mupr13488g00001 723 SUPERFAMILY E set domains 599 682 IPR014756 -
Mupr13488g00001 723 SUPERFAMILY WD40 repeat-like 68 313 IPR036322 GO:0005515
Mupr13488g00001 723 Gene3D Immunoglobulins 596 686 IPR013783 -
Mupr13488g00001 723 Gene3D - 10 325 IPR015943 GO:0005515
Mupr13488g00001 723 CDD DSP_laforin-like 460 587 IPR045204 GO:0019203
Mupr13488g00001 723 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 596 686 - -
Mupr13488g00001 723 CDD E_set_AMPKbeta_like_N 600 681 - -
Mupr13488g00001 723 Gene3D Protein tyrosine phosphatase superfamily 443 579 IPR029021 -
Mupr13488g00001 723 ProSiteProfiles Trp-Asp (WD) repeats profile. 162 196 IPR001680 GO:0005515
Mupr13488g00001 723 Pfam Glycogen recognition site of AMP-activated protein kinase 600 683 IPR032640 -
Mupr13488g00001 723 SMART WD40_4 149 187 IPR001680 GO:0005515
Mupr13488g00001 723 SMART WD40_4 232 277 IPR001680 GO:0005515
Mupr13488g00001 723 SMART WD40_4 57 96 IPR001680 GO:0005515
Mupr13488g00001 723 SMART WD40_4 107 145 IPR001680 GO:0005515
Mupr13488g00001 723 Pfam WD domain, G-beta repeat 155 186 IPR001680 GO:0005515
Mupr13488g00001 723 FunFam SEC12-like protein 1 12 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13488g00001 Mupr-Chr13488 8228 24819 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13488g00001 460 722 Protein tyrosine phosphatase (PTP) family AT3G52180 64.664 4.60e-128 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13488g00001 K14003 - gmx:100803472 770.77