LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mupr13468g00002	ATGTTTCGCGCAAATTTTAGCAGGGGTCCTCTCAAAATATTGACGAGGTGCCTCGTATTGCTTGCTATCTTGAAAGTGAGTTGTGCTATCAAAGATCCTGATATAGAAGGTGAAGCTCTGCTTGATCTTTTGCATGTCCTCAATGATACCAATAAGCAAATAACAGACTGGGACAGTCATATGGTGAGCCCGTGCTTCAGTTGGTCTCATGTCACTTGCAGAAACGGGCATGTCATATCCCTGGCCCTGGCTTCGGTTGGACTTTCTGGAACACTTTCTCCCTCCATTACCAAATTGAAATATTTGGTTAGCTTGGATTTACAGAACAATAATCTCTCAGGATCCTTGCCTGATTATATTTCCAACTTGGCAGACCTACAATATCTAAATCTTGCTGACAATAATTTTAATGGTTTTATACCAGCTAAATGGGGTGAACTATCCAATCTAAAGCATCTGGATCTTTCATCTAATGGTCTAACTGGAAGTATCCCAATGCAACTCTTTTCAGTCCCAATGTTTAACTTTTCAGATACGCACCTTCAGTGTGGCCCTGGCTTCGAGCAGCCTTGCTCTTCTAAATCTGAAAATCCAGCTTCAGCCCACAAATCAAAATTGGCAAAAATTGTACGTTATGCAAGTTGTGGTGCATTTGCACTTCTGTGTCTTGGAGCTATCTTTACTTATCTACTCCATCAAATGCATAGGCGCAAAACTGAAGTCTTTGTTGATGTTTCAGGTGAAGACGAGAGAAAAATTTCTTTTGGGCAATTGAGAAGATTTTCTTGTCGTGAACTCCAACTTGCCACTAAAAATTTCAGTGAAAGCAATGTAATTGGTCAGGGTGGCTTTGGAAAAGTGTACAAAGGAGTACTCTCTGATAACACAAAAGTGGCTGTGAAGCGCCTCATTAATTATCACAATCCTGGTGGAGAGGCTGCATTCGAGAGAGAAGTTCAACTAATAAGTGTTGCAGTTCATAGAAACCTCCTAAGACTAATTGGCTTCTGCACTACCACAACTGAAAGAATCCTTGTCTACCCTTTCATGGAAAATCTAAGTGTAGCATATCGACTCAGAGATTTAAAACCTGGTGAGAAAGGCTTGGACTGGCCAACAAGGAAACGAGTGGCTTTTGGCACAGCCCATGGTTTGGAGTATCTACATGAGCAATGCAATCCTAAGATAATACATCGTGATCTAAAGGCTGCAAATATCCTTCTAGATGATGAATTTGAAGCTGTGCTAGGTGACTTTGGTCTAGCCAAGCTTGTTGATGCAAGGATGACTCATGTCACCACTCAAGTGAGGGGCACAATGGGTCACATTGCCCCAGAGTATTTGTCCACTGGAAAATCTTCAGAGAAGACTGATGTTTTTGGATATGGCATAACACTTCTCGAACTAGTCACCGGTCAGCGCGCAATAGACCTCTCTAGGCTTGAAGAGGACGAGGATGTTCTTCTCATTGATTATGTAAAAAAGCTGCTGAGAGAAAATAGGTTGGAGGACATTGTGGATAGAAATTTGGAGAGTTATGATCCAAAGGAAGTTGAGACGATTGTTCAGGTTGCATTGCTTTGCACCCAAGGCTATCCTGAGGATCGTCCAACGATGTCAGAGGTTGTAAAAATGCTGCAGGGAGTGGGGTTGGCAGATAGATGGGCTGACTGGCAGCAACTTGAAGAGGCTAGGAATCAAGAATTCTCACTCATGACTCACCAATTTGTTTGGATTGATGAATCTACTCTTGATCAAGAAGCCATACAGCTTTCCAGAGCAAGA	1785	0.4224	MFRANFSRGPLKILTRCLVLLAILKVSCAIKDPDIEGEALLDLLHVLNDTNKQITDWDSHMVSPCFSWSHVTCRNGHVISLALASVGLSGTLSPSITKLKYLVSLDLQNNNLSGSLPDYISNLADLQYLNLADNNFNGFIPAKWGELSNLKHLDLSSNGLTGSIPMQLFSVPMFNFSDTHLQCGPGFEQPCSSKSENPASAHKSKLAKIVRYASCGAFALLCLGAIFTYLLHQMHRRKTEVFVDVSGEDERKISFGQLRRFSCRELQLATKNFSESNVIGQGGFGKVYKGVLSDNTKVAVKRLINYHNPGGEAAFEREVQLISVAVHRNLLRLIGFCTTTTERILVYPFMENLSVAYRLRDLKPGEKGLDWPTRKRVAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDEFEAVLGDFGLAKLVDARMTHVTTQVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRAIDLSRLEEDEDVLLIDYVKKLLRENRLEDIVDRNLESYDPKEVETIVQVALLCTQGYPEDRPTMSEVVKMLQGVGLADRWADWQQLEEARNQEFSLMTHQFVWIDESTLDQEAIQLSRAR	595

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mupr13468g00002	595	Gene3D	Transferase(Phosphotransferase) domain 1	350	565	-	-
	Mupr13468g00002	595	ProSitePatterns	Protein kinases ATP-binding region signature.	279	301	IPR017441	GO:0005524
	Mupr13468g00002	595	Pfam	Leucine rich repeat	102	160	IPR001611	GO:0005515
	Mupr13468g00002	595	Pfam	Protein kinase domain	274	544	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mupr13468g00002	595	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	19	556	-	-
	Mupr13468g00002	595	SUPERFAMILY	Protein kinase-like (PK-like)	252	547	IPR011009	-
	Mupr13468g00002	595	ProSiteProfiles	Protein kinase domain profile.	273	556	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mupr13468g00002	595	Gene3D	Ribonuclease Inhibitor	33	195	IPR032675	-
	Mupr13468g00002	595	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	396	408	IPR008271	GO:0004672\|GO:0006468
	Mupr13468g00002	595	PRINTS	Leucine-rich repeat signature	147	160	-	-
	Mupr13468g00002	595	PRINTS	Leucine-rich repeat signature	102	115	-	-
	Mupr13468g00002	595	FunFam	Somatic embryogenesis receptor kinase 1	242	349	-	-
	Mupr13468g00002	595	Gene3D	Phosphorylase Kinase; domain 1	242	349	-	-
	Mupr13468g00002	595	SMART	serkin_6	273	546	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mupr13468g00002	595	Pfam	Leucine rich repeat N-terminal domain	36	73	IPR013210	-
	Mupr13468g00002	595	FunFam	Somatic embryogenesis receptor-like kinase 1	350	566	-	-
	Mupr13468g00002	595	FunFam	Probable LRR receptor-like serine/threonine-protein kinase At5g63710	34	193	-	-
	Mupr13468g00002	595	SUPERFAMILY	L domain-like	37	172	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mupr13468g00002	Mupr-Chr13468	19031	23797	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mupr13468g00002	28	595	Receptor kinase-like Gene Family	AT5G10290	55.798	0.0	647

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Mupr13468g00002		Pkinase	2.4e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mupr13468g00002	-		-	gmx:100800886	1116.29