Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13441g00004 ATGCCGAGTCAGTCCGAGTCACCCACCAACTCACTGAGTGAACTAGCTCGGAACATGTTCTCCGACAACAACGACAGCAACATAATGCTGGCAGCCATCCTTTCCTTGCTCCTAGTGATCCTCTTCGTCCTCTTACTCCACGTGTACGCCAAGTGGTTCTTATCTCAGGCGCAAGCACGTTCCCACACTCGCCGGCGGCGAAATCCGGTGACCGTCTCCGGCGTTCTGGAACCTTCCCATTTGCACAGCTTCAACATAGAAGCCTCGGCCGCGTGTAGCAAAGGCCTCGACTCGGGCACAGTTTCGGCGATTCCCATGTTTGTCCATGGAACAGAGAAAACAGAGGAATTGGAATGTGTAATTTGTTTGAGCGTTATTGAGGAAGGTGAGGTTGGAAGAAGCTTGCCAAAGTGTGGCCACGCTTTTCACGTGGAGTGCATTGACATGTGGCTCAGTTCTCATTGCAATTGTCCAATTTGTAGAGCCCCTATTGTGGTGAGTGCCGATTCTCAATTGGGTTCTGTTGATGATGATGCTGTCTTTGAGATTGTTGTTGTTACTCCTGGTTATCAGATTAGTGACACTGCTTCTGTTCCAGAAACTTCTTCATCTTTGTTGGGTTTCTCTTTTAAGAGATTGCTGTATAAGAAGAAAACGGATGGGATGGCACAGGGAAAGGACAAAACTTTATGTACAGAGCCATCCATGTTTAGTCCTCAGTTCTCAATATTTTTGAAGCTCCCCTGGATGAGAGTACAGTTATGTAAATGGGGTGGTCAGAACACACTGAGGCCATGTATAGTGACATGCATTGCATTGCGAAGCCCCTTCCCCTCTTGTTATGCTTCTCCCATTGAGCCCGTGAGCATGTCACGCTCGAAAGTAGCTATATAA 894 0.4787 MPSQSESPTNSLSELARNMFSDNNDSNIMLAAILSLLLVILFVLLLHVYAKWFLSQAQARSHTRRRRNPVTVSGVLEPSHLHSFNIEASAACSKGLDSGTVSAIPMFVHGTEKTEELECVICLSVIEEGEVGRSLPKCGHAFHVECIDMWLSSHCNCPICRAPIVVSADSQLGSVDDDAVFEIVVVTPGYQISDTASVPETSSSLLGFSFKRLLYKKKTDGMAQGKDKTLCTEPSMFSPQFSIFLKLPWMRVQLCKWGGQNTLRPCIVTCIALRSPFPSCYASPIEPVSMSRSKVAI 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13441g00004 297 CDD RING-H2_EL5-like 118 161 - -
Mupr13441g00004 297 FunFam RING-H2 finger protein ATL1 83 166 - -
Mupr13441g00004 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 169 IPR013083 -
Mupr13441g00004 297 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Mupr13441g00004 297 Pfam Ring finger domain 118 161 IPR001841 -
Mupr13441g00004 297 SUPERFAMILY RING/U-box 109 167 - -
Mupr13441g00004 297 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 13 169 - -
Mupr13441g00004 297 SMART ring_2 119 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13441g00004 Mupr-Chr13441 20431 22761 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13441g00004 27 162 Rapid Response to Elicitors AT3G16720 41.727 2.95e-27 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13441g00004 - - gmx:102665763 326.635