Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1338g00001 ATGGGTAGGAGTGATGCCTTTGTGTCTCCACCATATCTTGTGTCACAGCCAAACCCACCTTTTCCACCCACTGTTCGATCTGATAGTTTGAGTTTGAACGATAAGGCCTTAAAGGTTAGTCCAAGCATTCTCCTCATCATTATAATTCTGGCTATTGTTTTCTTCATTTCTGGTTTGCTCCACCTGCTGGTTAGATTTCTTTGGAGGCCCCAAACTAGAGAGCCTGATGATTTGGACAATGTGACTGCTCTCCAAGGGCAATTGCAGCAACTCTTCCACCTCCATGATGCTGGGGTTGACCAGTCCTTCATTGACACCCTCCCTGTCTTCCTCTACAAGGCCATCATAGGACTCAAGAACCCCTTTGACTGTGCCGTTTGTTTGTGTGAGTTTGAGCCTGAGGACAAGCTCAGGTTGCTACCAAAATGTAGCCATGCTTTTCACATGGACTGTATTGACACCTGGCTCTTGTCTCACTCTACTTGTCCTCTTTGTAGAGCCAGCTTGCTCCCTGAATTCAACTCAACCACCACATTTTCCCCTATTGTTCTTGTCCTAGAATCTGGGAGTGAGAGCTCCAGGGAGATTGTTCCTGAAAGAGAGGCTGCTGTTGGAAGGACTAGTTCGGTCATGACAACAAATTCTCGTCTTGGTTGCCGTGGAGATACTGAATTTGGGTCTACACGTGTGGACTTGAAATCAGGTGAGTTGTTAAGTGAAGTTCCTGATCCAAAGGTACCGGATGGTGTGGAGAAAGTGGTTACCGTTAAGCTGGGGAAGTTTAGAAGTGTGGATGGTGGAGGTGAAGGTGGTGGTGGGGAAGGGAGTAGTAGTACTAGTACCAACAATGTGGATGCTAGAAGGTGTTTTTCTATGGGCTCATTTGCTTATGTTATGGATGAGACTTCCTCACTACAAGTACCCATAAGAACTCCAATCAAGAAGCAATCAAGTAAGAAGAAGTCTGGTTTGCCTTTGACTCCAGGACACAGGCCTGCAATGTCAGAATGTGACTGTGAATCCAGAAGGGATTTCAAGTTTTTAGGCTTTGATGCAACTATAGTTGAGGATGCTGCTTGTAATGGGAATGGTGCTGCTATTGGAAGGAGCAGAAAGGAGAGTTTCTCTATATCCAAGATTTGGCTTAGGGGGAAGAAGGATAAGCCAAATGCTGTGGCGGATTCATCTAGAAGGGCTGTTTCATTTCGCTTCCCGACCAAGCCTAGTGTTGTTGCTGCTTCTCAAGATGATTTGAAGGGCAAGAATTGTTGCAAGTTTGACACAAGGAGTACTATTTCTGAGATGGATATTGGCAAGTGGGAAAATGGAGGAGGAAGTGAGTTCGATTATGATGACGAAAACCAGAGTTGTTATAGCATGGATTCTCAAGCTAGGGCGCCATCTTTTGCTAGAAGGACTTTGCTTTGGCTCACTGGAAGACAGAATAAGGAAAGTGTGCGTCACTTGGCCCCGGGACAAAATTTTAATAAAGTAATGAATGTATCTTTATGGAAAAGTGGTGGTGTTGATTTAGAAAGGTTAGCGGAAAATAGGAAGCAAGGGACTCGTGGATGCATACTGGGGATTGCATTAAATAGAAGGAGTATTGAAAGGAGTTTGGAAAAGAGGCAGTGA 1635 0.4489 MGRSDAFVSPPYLVSQPNPPFPPTVRSDSLSLNDKALKVSPSILLIIIILAIVFFISGLLHLLVRFLWRPQTREPDDLDNVTALQGQLQQLFHLHDAGVDQSFIDTLPVFLYKAIIGLKNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRASLLPEFNSTTTFSPIVLVLESGSESSREIVPEREAAVGRTSSVMTTNSRLGCRGDTEFGSTRVDLKSGELLSEVPDPKVPDGVEKVVTVKLGKFRSVDGGGEGGGGEGSSSTSTNNVDARRCFSMGSFAYVMDETSSLQVPIRTPIKKQSSKKKSGLPLTPGHRPAMSECDCESRRDFKFLGFDATIVEDAACNGNGAAIGRSRKESFSISKIWLRGKKDKPNAVADSSRRAVSFRFPTKPSVVAASQDDLKGKNCCKFDTRSTISEMDIGKWENGGGSEFDYDDENQSCYSMDSQARAPSFARRTLLWLTGRQNKESVRHLAPGQNFNKVMNVSLWKSGGVDLERLAENRKQGTRGCILGIALNRRSIERSLEKRQ 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1338g00001 544 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 172 IPR013083 -
Mupr1338g00001 544 MobiDBLite consensus disorder prediction 1 20 - -
Mupr1338g00001 544 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 36 381 - -
Mupr1338g00001 544 FunFam RING-H2 finger protein ATL46 86 171 - -
Mupr1338g00001 544 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Mupr1338g00001 544 MobiDBLite consensus disorder prediction 264 283 - -
Mupr1338g00001 544 Pfam Ring finger domain 123 166 IPR001841 -
Mupr1338g00001 544 CDD RING-H2_EL5-like 123 166 - -
Mupr1338g00001 544 SMART ring_2 124 165 IPR001841 -
Mupr1338g00001 544 SUPERFAMILY RING/U-box 103 173 - -
Mupr1338g00001 544 MobiDBLite consensus disorder prediction 312 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1338g00001 Mupr-Chr1338 4510 6867 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1338g00001 31 483 C3H Transcription Factor Family AT2G18650 46.336 4.34e-104 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1338g00001 - - gmx:100797283 794.267