Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1337g00004 ATGGCTTCTGGTTGCGCTCTAGGGTTTTTTTTCTCGTTCTTTTTTGGCAAAACAGGAACTTCTAAGTGTAATTTGCCAGATTCATGCTTGTTCAGCAAGATTCCTCGGATCGGCAGCGGGACGCACATGTTGCTTGTCCAAGAACTGAAAATTTTTATTTCTGCAAACTTTGGTCGTTCCTCTCAATTTGTCACTGACATTACCGTCAATCCTGGATGGGATGCATTGAAGGAATGCCCAAGCACTCAAGCATGTGCATTTATTCAGTTTATGAATGTTGCAAGCTTGCTGAAAATGAGTAGCTCAGTTGGGCTTCGTGCACGGTCGAACCGTAGACCTGTCTATACTTTTGACGAGTCAGATGATGATTCAGATATTTTGCCTAGAAAACGTGAGAAACCTCAGGAAAAGATTGGTACAAGTGATACGATGCGTATGAGAACCAATCGCGGCAAGCCGATTTATAATGTAGACGAGTCAGATGATGATTCTGATATTTTGCCTACAAAACGTGGGAACCGTCAGGAAAAAATTGAGAAAATTGCTAGAAGTGATGTAAAAGTCAATTCATGTCAAGCTTGTGGAGAATTTGGAAATCTTCTGAGCTGTGAAACATGCACCTATTCTTTCCATCCTAGCTGTATACTCTTACCACTTAAAGTCCCCTCTCGAGACAATTGGAGGTGCTCTGCGTGTGTTAGCCCACTGAATGATATTGATAAGATATTAGACTGTGAGATGCGTTCCCCAGTAGCTGGTGAAAGTGATGCCACAAAATTGGGGGAAAAGCAAAATTTTGTCAAACAATATCTTGTTAAGGTGCTAGAGGAAGAGTTTCTGAAAGCTTTCAAGAATCATCCAGGTCTAAAGACCAAAGTAAACAATTTCCATCGTCATATGGCTAATGCCAATCTACCTAATGAAGATTTTGTCGTAATTCAACCTGAATGGACTGTGGTTGATCGAGTACTTGCTTGCAGGGGTCACAATGATAAGGAATATCTTGTGAAGTGGAAAGGGCTTCCATATGATGAATGCTATTGGGAGCTCGAGTCAGATATCTCTTCATTTCACACAGAAATAGAAAGATTCAACACATTACAGTCTAGACCATGGAAAAAATTTTCTAGTAAGAAAAAAAGTAGTGTTGAGGATGGTGCTGCATCGAATAAGCAGCAGAAAGAATTTCAACAGTACGAACACAGCCCTCAATTTCTTTCAGGGGGTACACTGCATTCATACCAACTTGAAGGATTGAACTTCTTACGGTTCTCTTGGTCTAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGCAAAACCATACAGAGTATTGCTTTCCTAGCATCCCTGTTTGAAGAGAATGTTTCTCCACATCTGGTGGTTGCTCCACTTTCAACATTGCGAAACTGGGAACGTGAATTTGCAACTTGGGCACCTCAAATGAATGTTGTTATGTATGTTGGATCTTCCAAAGCTCGTGCTTTTATTAGAGAGTATGAGTTTTACTTTCCAAAGAATCAAAAGAAGATCAAGAAAAAGAAATCTCAGCAAATAGTTAAGGAAAGCAAACAAGAAAGGATAAAGTTTGATGTCCTTTTGACATCATATGAGATGATAATTTCTGATACATCATCATTGAAACCTATAAAGTGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTCAAAAACAAGGATTCTAAATTATTTTCTTCATTGAAGCAATATTCTTGCACACATCATGTTCTTTTGACAGGAACTCCTCTTCAGAACAATCTGGATGAACTTTTCATGCTTATGCATTTCCTTGATGCTGGGAAGTTTGGAAGTTTGGAGGAGTTCCAAGAGGAGTTCAAGGATATCAATCGAGAGGAGCAGATTTCGAGACTACATAAAATGTTGGCACCACATCTCCTGCGAAGAATGAAGAAGGATGTCATGACGGAACTGCCTCCAAAAAAGGAACTTATTTTACGTGTTGAATTATGCAGCAAACAGAAAGAATACTACAAGGCAATTTTGACTCGTAATTATCAGATATTAACTCGCCAAGGTGGTGCACAAATTTCTCTTGTCAATGTTGTTATGGAACTGCGTAAGCTCTGTTGTCATCCCTATATGTTACAGGGAGTTCAACCAGAACTTGATTGTGAAAAAGAATCACACAAGCAATTACTTGAATCATCTGGGAAGTTGCAGTTGTTGGACAAGATGATGGTGAAGCTTAAAGATCAAGGACATAGAGTCCTCATATATTCCCAATTTCAGCGCATGCTGGATTTGCTGGAAGATTACTGTTATTACAAGTATGAGAGGATAGATGGCAAGGTTGGAGGAGCTGAAAGACAAGTACGGATAGATCGATTTAATGCTAAACATTCTTCAAGATTTTGTTTTCTTCTTTCTACTAGAGCCGGGGGATTGGGGATAAACCTTACAACAGCTGACACAGTTATTATATATGACAGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCCAGAGCTCATCGACTTGGACAAACTAACAAGGTGATGATTTATAGGCTTATAACAAGGGGAACAATTGAAGAAAAGATGATTCAGATGACAAAGAAGAAAATGGTGTTAGAACACCTGGTTGTAGGCAGGCTAAAGGATCAAAACATTAACCAGGAAGAGTTGGATGATATCATAAGGTATGGCTCAAAGGAGTTATTTGCTGATGAGAATGATGAAGTTGGCAAATCTCGCCAAATTCATTATGATGATGATGCTATAGACAGATTGCTGGATCGTGATCAAGTTGGAGATGAAGAGGCCGCTTTGGATGGTGAAGATGAAGATGGATTTCTAAAGGCTTTTAAGGTGGCAAATTTTGAATACATTGAAGAAGCTGATCAAGCAGAGGAGGTGGCACAAAATACAGCGAAGGAGAATCAATCTGCAACCAGCTCAAAAAGAACAAATTACTGGGAGGAGTTGTTAAAGGACAGATATGAAGAGCATCAAGTTGAAGAGTTAAATGTCTTGGGCAAAGGGAAGCGAAACCGCAACAAATTGCAGGGGGAGGGTATTAGTGTTTTGGAAGATGTAAGCTCTGATGGTGATGATGACAATTACGAAGCAGATCTTACTGATGATGATTCAAATTCAACTGAATCTATTACTAAAAGGCCTCACAAAAAGAAAACTCGTGCAGATAGCACAAAGTCACTTCCTTTAATGGAAGGTGAAGGAAAATCTCTGAAAGTACTTGGTTTTAGTCAAAGTCAAAGGGCAGCTTTTGTTCAAATTTTGATGAGGTTTGGGGTTGGTGATTATGATTGGAAAGAGTTTACTTCCCGCATGAAACAGAAGAGTTATGAAGAAATCGAGGAGTATGGAAAACTTTTCTTGTCTCATATTGCAGAAGATATAACTGATTCCCCTACATTCACAGATGGTGTTCCAAAAGAGGGACCTCGAATACAAGATATACTTGTAAGGATTGCAGTTCTGCTCTTGATAAGGGACAAAGTGAAGTCTGCATCAGAAAATCCTCACACTCGGCTTTTTTCAGATGATATCTTAGTACGCTATGCAGGTTTGAAGGGTGCAAAGATATGGAAGGAGGAGCATGATTTAATATTACTGCATGCTGTGTTGAAGCATGGCTATGGAAGGTGGCATGATATTGTTGGTGATAGGGATCTGAAGATTCAGAAGGTCATCTGTCAGGAGTTGAATATTCCATTTATAAACTTACCAGTTCAAGAACAAGTTGTCTCTGTGCACAATAGTGCAAATATGACAAATGTGGAATCCAGCTCCAACCGAACTGGTGAAAATGGTAGGAGTGACATAGCAGCTGATCGTACAAATATGACAAATGTGAAATTGGTCTGCAACCAATCTAAGGAGAGTGGTAGGAGTGACATAGCTGCTGAAGGTGCACATGGTTCTGGTGATGCTAGGAACCAAGCAGAGTTATACCAAAAGTCCCCCATATTGCATCAGTTTAGAGACATGCAGAAAAGACAGATTGACTTTATAAAGAAAAGGTTTCTTATTGTGGAAAAAGGTCTCCACGCAGAGTACCAGAAAGAATACTTCAGTGATTTGGAAGCAAATGAGGTGACAAATGAAAATCTAGGTGACCCCAAGCCTATAAACGTAGTAAGTTATACACAAGTGATTGATCAACTTCCTCAAGTCGAAGCAATAGAAGGTGGGATTTGGGAAACATTTTTTAAGCTGAGTATCTATATCAACTATCTCTCACTCTTTTGGCAGATGTGCAAGATTGTGAAGGAAAATACCATGGATTTAGTTCAAACGTCTTTTGCAAGTGAACTGAAAAATGTCAGCATTATTAACGAGTTCCATAAATTAAAAATCATTTGTGAAGATGTCAATAGAATTCTAAATCAACGTTCAGTAGAAATGCCAATTCTTAATTCTGTCAACAAATCGGATACTTCATCACAGACTGAAGTTGTGGGCTCTGGATTGCTGTCTAATTCTCAAGATGAATGCAAACCTGAAGATATGGAATATAGATTAAAAAGAAAAGGCATCGGAGCATATAGTGTTGTAAAATACCTTGCTTCAGAATTCATTAGAAATTGTGTGTGGATGAATTGCTTAATATTCATTATT 4632 0.3897 MASGCALGFFFSFFFGKTGTSKCNLPDSCLFSKIPRIGSGTHMLLVQELKIFISANFGRSSQFVTDITVNPGWDALKECPSTQACAFIQFMNVASLLKMSSSVGLRARSNRRPVYTFDESDDDSDILPRKREKPQEKIGTSDTMRMRTNRGKPIYNVDESDDDSDILPTKRGNRQEKIEKIARSDVKVNSCQACGEFGNLLSCETCTYSFHPSCILLPLKVPSRDNWRCSACVSPLNDIDKILDCEMRSPVAGESDATKLGEKQNFVKQYLVKVLEEEFLKAFKNHPGLKTKVNNFHRHMANANLPNEDFVVIQPEWTVVDRVLACRGHNDKEYLVKWKGLPYDECYWELESDISSFHTEIERFNTLQSRPWKKFSSKKKSSVEDGAASNKQQKEFQQYEHSPQFLSGGTLHSYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEENVSPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSSKARAFIREYEFYFPKNQKKIKKKKSQQIVKESKQERIKFDVLLTSYEMIISDTSSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSCTHHVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINREEQISRLHKMLAPHLLRRMKKDVMTELPPKKELILRVELCSKQKEYYKAILTRNYQILTRQGGAQISLVNVVMELRKLCCHPYMLQGVQPELDCEKESHKQLLESSGKLQLLDKMMVKLKDQGHRVLIYSQFQRMLDLLEDYCYYKYERIDGKVGGAERQVRIDRFNAKHSSRFCFLLSTRAGGLGINLTTADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLITRGTIEEKMIQMTKKKMVLEHLVVGRLKDQNINQEELDDIIRYGSKELFADENDEVGKSRQIHYDDDAIDRLLDRDQVGDEEAALDGEDEDGFLKAFKVANFEYIEEADQAEEVAQNTAKENQSATSSKRTNYWEELLKDRYEEHQVEELNVLGKGKRNRNKLQGEGISVLEDVSSDGDDDNYEADLTDDDSNSTESITKRPHKKKTRADSTKSLPLMEGEGKSLKVLGFSQSQRAAFVQILMRFGVGDYDWKEFTSRMKQKSYEEIEEYGKLFLSHIAEDITDSPTFTDGVPKEGPRIQDILVRIAVLLLIRDKVKSASENPHTRLFSDDILVRYAGLKGAKIWKEEHDLILLHAVLKHGYGRWHDIVGDRDLKIQKVICQELNIPFINLPVQEQVVSVHNSANMTNVESSSNRTGENGRSDIAADRTNMTNVKLVCNQSKESGRSDIAAEGAHGSGDARNQAELYQKSPILHQFRDMQKRQIDFIKKRFLIVEKGLHAEYQKEYFSDLEANEVTNENLGDPKPINVVSYTQVIDQLPQVEAIEGGIWETFFKLSIYINYLSLFWQMCKIVKENTMDLVQTSFASELKNVSIINEFHKLKIICEDVNRILNQRSVEMPILNSVNKSDTSSQTEVVGSGLLSNSQDECKPEDMEYRLKRKGIGAYSVVKYLASEFIRNCVWMNCLIFII 1544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1337g00004 1544 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 423 609 IPR014001 -
Mupr1337g00004 1544 SUPERFAMILY Chromo domain-like 303 366 IPR016197 -
Mupr1337g00004 1544 SUPERFAMILY FYVE/PHD zinc finger 185 235 IPR011011 -
Mupr1337g00004 1544 Gene3D - 654 875 IPR027417 -
Mupr1337g00004 1544 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 242 IPR013083 -
Mupr1337g00004 1544 Gene3D - 1155 1279 - -
Mupr1337g00004 1544 ProSiteProfiles Chromo and chromo shadow domain profile. 318 364 IPR000953 -
Mupr1337g00004 1544 SMART chromo_7 316 369 IPR000953 -
Mupr1337g00004 1544 Gene3D - 403 653 IPR038718 -
Mupr1337g00004 1544 MobiDBLite consensus disorder prediction 1023 1071 - -
Mupr1337g00004 1544 Pfam CHD subfamily II, DUF1087 965 1018 IPR009463 -
Mupr1337g00004 1544 SMART helicmild6 763 844 IPR001650 -
Mupr1337g00004 1544 MobiDBLite consensus disorder prediction 116 138 - -
Mupr1337g00004 1544 SMART DUF1086_2 1030 1188 IPR009462 GO:0003677|GO:0006338
Mupr1337g00004 1544 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 646 900 IPR027417 -
Mupr1337g00004 1544 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 393 644 IPR027417 -
Mupr1337g00004 1544 ProSitePatterns Zinc finger PHD-type signature. 191 232 IPR019786 -
Mupr1337g00004 1544 CDD SF2_C_SNF 732 855 - -
Mupr1337g00004 1544 Pfam CHD subfamily II, SANT-like domain 1053 1185 IPR009462 GO:0003677|GO:0006338
Mupr1337g00004 1544 Pfam Helicase conserved C-terminal domain 734 844 IPR001650 -
Mupr1337g00004 1544 SMART DUF1087_2 964 1032 IPR009463 -
Mupr1337g00004 1544 MobiDBLite consensus disorder prediction 1028 1046 - -
Mupr1337g00004 1544 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 119 1372 - -
Mupr1337g00004 1544 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 737 895 IPR001650 -
Mupr1337g00004 1544 CDD CD2_tandem 316 364 - -
Mupr1337g00004 1544 Gene3D - 308 366 - -
Mupr1337g00004 1544 SMART ultradead3 407 620 IPR014001 -
Mupr1337g00004 1544 Pfam Chromo (CHRromatin Organisation MOdifier) domain 319 365 IPR023780 -
Mupr1337g00004 1544 SMART PHD_3 190 233 IPR001965 -
Mupr1337g00004 1544 Pfam SNF2-related domain 431 711 IPR000330 GO:0005524|GO:0140658
Mupr1337g00004 1544 ProSiteProfiles Zinc finger PHD-type profile. 188 235 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1337g00004 Mupr-Chr1337 24985 51852 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1337g00004 433 905 RAD5 or RAD16-like Gene Family AT1G02670 24.776 4.51e-32 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr1337g00004 SNF2_N 2.1e-63 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1337g00004 K11643 - gmx:100804203 1943.7