Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13339g00002 ATGCCCTTGGCTGGACAACCTACCATACAAGAAATCAAGGAAAAAATCAAACATACTTCAGCGATTAGTTCCAGATTTGCAAACAATTATGGCGGCAGCTTCCTCATCCACTCCATTCTTGGGAATCAGAGAAGAAAGCTCAAGTCAGACTATTTCACACCATCAACCCTCCACAGTTGCTCCTCAAAAGAAACGGAGGAATCAACCTGGAACACCATGCAACGAAGAGTGTTTTTTAATAATTTGTTGTTTGTCATTTTTGATGGGGTAAAAGATCCAGATGCGGAGGTGATAGAACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTGTGCAATAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTTCACAGAAGAGGACACAACCTGCCTTGGAAGCTAAAGCAGAAGAGTACAAAAGAGCCAAAAAGAAAGGTTTATCTGTGTCCCGAGCCCACCTGCGTCCATCATGATCCTTCAAGGGCTTTGGGAGACCTCACTGGGATCAAGAAGCACTACTCTCGCAAGCACGGCGAGAAGAAGTGGAAGTGTGAAAAGTGCTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCACATTCTAAGACTTGTGGCACTAGAGAATATAGATGTGACTGTGGCACTCTCTTCTCTAGGCGTGACAGTTTCATCACGCATAGGGCCTTTTGTGATGCGCTAGCACAAGAGAGTGCAAGATACCCCAGTGGTTTAAACCCTTTGGGGAATCACTTGTTTGGCACAAACCACTCGAGTTTAAGCCTATCCCAAGTGGGTACCCAACTTTCCCAAGTTCATAATCAGAACCAAACAGCCACTAACAATAACAGCATTTTGCGCCTTGGCAATGTTGGTGCAGCTCCAAAGTTTGAGCACTTGATCCCACCTCTGAATCACTCTTCATTCGGACACTCACCACAATCAATGCATTCCTCAGCTTTCTTCATTAGTGACAGCACAAATCAAGCATTTGAAGAACACCAATCACACCAAGGACCATTATTCTCAAGCAAGCAACTACATGGCCTAATGCAACTCGCTGATCTTCAACGCAACAACAACAACTCAGGTTCTTCTTCAGTTGCTGCTCCTTCAAATCTTTTCAACCTTAGCTTCTTCCCAAGTAGCAATAGCACCACCATAATCCCTGATAGTTTCAACAACATAAATGGTAGTGACCAAGGAACAACAACACCACCACCACTCTATGTTAATAACAACCCTGCAGTAAGTGACCAAGTTGGTTCCAGTTTTTCTTCACTCTTTGGCAACTCAATAGAAAACGTGTCATTCCCTCACATGTCTGCCACCGCGTTGCTTCAAAAAGCTGCTCAAATGGGTTCAACCACAACCACCAACGGTAGTTCTTCTTTACTTGGGGGAATGTGTGGCTCCTCAAATAACAATGGTTCTTCCAAAGCTGATGAAAACGACCACCACCACCACAATCTTCACGGGTTGATGAACTCTATTGCCAACGGAAACACGTCCTTGTTTGGGAACATGCAAGGGAACGAAAACAACCTTTGTGGGTTTCACAACATGGATGAGTCCAACAGTAAGTTGCCACAGAATCTCAATGTAAACTTTGGAGGTTCTGATAAATTGACCTTAGACTTTTTGGGTGTTGGAGGAGTGGTGAGAAACATGAGTGGTGGATTTTCACAAAGAGAACAACAACAACAACAACGTGTCATGGGTACTATGAGTTCTTTGAATCATGACCTAAAGTCAGCACAGTCAAATCTTCATTTTGGAAGGTCAACGTTGCAATAA 1809 0.4362 MPLAGQPTIQEIKEKIKHTSAISSRFANNYGGSFLIHSILGNQRRKLKSDYFTPSTLHSCSSKETEESTWNTMQRRVFFNNLLFVIFDGVKDPDAEVIELSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARYPSGLNPLGNHLFGTNHSSLSLSQVGTQLSQVHNQNQTATNNNSILRLGNVGAAPKFEHLIPPLNHSSFGHSPQSMHSSAFFISDSTNQAFEEHQSHQGPLFSSKQLHGLMQLADLQRNNNNSGSSSVAAPSNLFNLSFFPSSNSTTIIPDSFNNINGSDQGTTTPPPLYVNNNPAVSDQVGSSFSSLFGNSIENVSFPHMSATALLQKAAQMGSTTTTNGSSSLLGGMCGSSNNNGSSKADENDHHHHNLHGLMNSIANGNTSLFGNMQGNENNLCGFHNMDESNSKLPQNLNVNFGGSDKLTLDFLGVGGVVRNMSGGFSQREQQQQQRVMGTMSSLNHDLKSAQSNLHFGRSTLQ 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13339g00002 602 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 133 IPR013087 -
Mupr13339g00002 602 Gene3D Classic Zinc Finger 165 244 - -
Mupr13339g00002 602 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Mupr13339g00002 602 Pfam Zinc-finger double-stranded RNA-binding 111 133 IPR022755 -
Mupr13339g00002 602 SMART c2h2final6 152 182 IPR013087 -
Mupr13339g00002 602 SMART c2h2final6 187 207 IPR013087 -
Mupr13339g00002 602 SMART c2h2final6 111 133 IPR013087 -
Mupr13339g00002 602 Gene3D Classic Zinc Finger 90 159 - -
Mupr13339g00002 602 MobiDBLite consensus disorder prediction 474 495 - -
Mupr13339g00002 602 FunFam protein indeterminate-domain 5, chloroplastic-like 165 244 - -
Mupr13339g00002 602 FunFam protein indeterminate-domain 12-like 90 158 - -
Mupr13339g00002 602 SUPERFAMILY beta-beta-alpha zinc fingers 110 207 IPR036236 -
Mupr13339g00002 602 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 89 574 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13339g00002 Mupr-Chr13339 26650 30621 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13339g00002 94 563 IDZ Gene Family AT2G02070 47.461 4.84e-122 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr13339g00002 zf-C2H2_jaz 3.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13339g00002 K25870 - gmx:100780268 768.074