Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr1332g00001 ATGGTAGTGGCGATGAAGAGACAGAGAGAAAGCGAATCAATAGAGAGCATAGATCTGGCAAATAGTCTGATTCTACTCTCGCATGCCCAAAAAAAGCCCCTTCTAAAAAGTTTGGGTCAAGCGGAGTTCGAGTGCAAGACCTGTAACCGCAAGTTCCCATCGTTTCAGGCCCTGGGTGGGCACCGGGCCAGCCACAAGAAGCCCAAGTTGGAGGGAGAGGAATTGAAAGCAGAGGGAAAGGGTCTGAGTCTGGGGAACAAGGGGAAGATGCACGAATGTTCCATTTGTGGCATGGAATTCTCTTTGGGACAGGCCCTGGGTGGGCACATGAGAAAGCACAGAAGTGCCGTTAATGCCGTTAATGCCGTTAATGATAACAAACAAGGGTTTCCTTCTATGAAAGCCCTCCCTGTTCTGAAAAGATCGAATAGCAAGAGGGTCATGTGTTTGGAATTGGACCTCAATTTAACGCCTCTGGAAAATGACTTGAAGTTGTTGTTCGGGAACAAGGCTCCTACAATCAATCTTTCTTTTAGCAATATGAAGAGACAGAGAGAAAATGAAGCAACAACATTAGAAAGCTGGGACATGAGAAATTGTTTAATGGTGGCCGAAACAAGTGTGTCGGCATCCACTGAAGTAATAGAGTGCAAAACATGCAACCGCGTGTTCTCGTCATTTCAAGCACTGGGTGGGCACAGGGCAAGTAGCCACAAGAGAGCGAAGCTGGAAGGGGAAAAATCTCTGGGCTTGGGAATACGGAGTGGGCCCAAAATGCACCTGTGTTCCATTTGTGGAATGGGTTTCTCTCGAGGCCAGGCCCTGGGAGGACACATGAGAAGACACAGAGCTGCCACCAAGGAACCGTTTTCTTCCATAAACCAGGTTGTCGCAAAAGTTTCGGTTCTCAAGAGATCGTGTATTGACAAGGTTTTCTGCTTCGACCTCAACTTAACTCCTCTCCAGAATGACTTAAACTTATTCTTGTTCGGGAAAGTGTCAGCCAAACGAGTGGCCATGAAGAGACAGAGAGATGGAATAATAGATTTGGCAAATTGTCTAATGCTGCTCTCTCATCCCAGAGAAAGTAAAACCCAGAAACTTTTGGGCCCAGTAGAATTTGAGTGCAGGCCCTGCAACCGCAAGTTCTCTTCGTTCCAAGCCCTTGGTGGCCACAGGGCCAGCCACAAGAAGCCCAAAGTAGACGGGAAAGAACAGGGCAAAATTCTGAGGCTGGGGAATAAGCCCAAAAAGCACAAGTGCTCCATTTGTGGTAAGGAATTCTCTTTGGGCCAGGCATTGGGAGGACACATGAACAAAGGGTTTTCTTCGATAAACCAGGTTGTTGTACAAGTTTCGGTTCTGAAAAGGTCGATTAGTACGAGGATTATGCGCTTGGATTTGAATTTGACTCCTCTCCAGAATGACTTGAAGTTATTGTTCGGAGACAAGGCACCCAAAATTGATTCCTTCCCCTGA 1479 0.4706 MVVAMKRQRESESIESIDLANSLILLSHAQKKPLLKSLGQAEFECKTCNRKFPSFQALGGHRASHKKPKLEGEELKAEGKGLSLGNKGKMHECSICGMEFSLGQALGGHMRKHRSAVNAVNAVNDNKQGFPSMKALPVLKRSNSKRVMCLELDLNLTPLENDLKLLFGNKAPTINLSFSNMKRQRENEATTLESWDMRNCLMVAETSVSASTEVIECKTCNRVFSSFQALGGHRASSHKRAKLEGEKSLGLGIRSGPKMHLCSICGMGFSRGQALGGHMRRHRAATKEPFSSINQVVAKVSVLKRSCIDKVFCFDLNLTPLQNDLNLFLFGKVSAKRVAMKRQRDGIIDLANCLMLLSHPRESKTQKLLGPVEFECRPCNRKFSSFQALGGHRASHKKPKVDGKEQGKILRLGNKPKKHKCSICGKEFSLGQALGGHMNKGFSSINQVVVQVSVLKRSISTRIMRLDLNLTPLQNDLKLLFGDKAPKIDSFP 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr1332g00001 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 215 243 IPR013087 -
Mupr1332g00001 492 Gene3D Classic Zinc Finger 372 440 - -
Mupr1332g00001 492 Gene3D Classic Zinc Finger 215 282 - -
Mupr1332g00001 492 Gene3D Classic Zinc Finger 40 113 - -
Mupr1332g00001 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Mupr1332g00001 492 ProSitePatterns Zinc finger C2H2 type domain signature. 376 396 IPR013087 -
Mupr1332g00001 492 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Mupr1332g00001 492 ProSitePatterns Zinc finger C2H2 type domain signature. 217 238 IPR013087 -
Mupr1332g00001 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 118 IPR013087 -
Mupr1332g00001 492 Pfam C2H2-type zinc finger 374 399 - -
Mupr1332g00001 492 Pfam C2H2-type zinc finger 91 115 - -
Mupr1332g00001 492 Pfam C2H2-type zinc finger 43 68 - -
Mupr1332g00001 492 Pfam C2H2-type zinc finger 216 240 - -
Mupr1332g00001 492 Pfam C2H2-type zinc finger 260 284 - -
Mupr1332g00001 492 Pfam C2H2-type zinc finger 419 438 - -
Mupr1332g00001 492 SUPERFAMILY beta-beta-alpha zinc fingers 215 282 IPR036236 -
Mupr1332g00001 492 PANTHER ZINC FINGER PROTEIN ZAT5 5 162 - -
Mupr1332g00001 492 SUPERFAMILY beta-beta-alpha zinc fingers 374 438 IPR036236 -
Mupr1332g00001 492 ProSitePatterns Zinc finger C2H2 type domain signature. 262 282 IPR013087 -
Mupr1332g00001 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 260 287 IPR013087 -
Mupr1332g00001 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 374 401 IPR013087 -
Mupr1332g00001 492 SUPERFAMILY beta-beta-alpha zinc fingers 43 113 IPR036236 -
Mupr1332g00001 492 SMART c2h2final6 374 396 IPR013087 -
Mupr1332g00001 492 SMART c2h2final6 260 282 IPR013087 -
Mupr1332g00001 492 SMART c2h2final6 91 113 IPR013087 -
Mupr1332g00001 492 SMART c2h2final6 419 439 IPR013087 -
Mupr1332g00001 492 SMART c2h2final6 215 238 IPR013087 -
Mupr1332g00001 492 SMART c2h2final6 43 65 IPR013087 -
Mupr1332g00001 492 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr1332g00001 Mupr-Chr1332 7574 16918 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr1332g00001 340 489 C2H2 Transcription Factor Family AT2G37430 48.276 1.42e-36 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr1332g00001 zf-C2H2_6 2.6e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr1332g00001 - - aprc:113870747 348.977