Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13306g00002 ATGAATAGAACGAAAGTTGTATTCTCTGGTAGTTTAGCTTGGCTGCTATTATTGGAGTTGCAATTTGAACGATTGCTAGCTTCAAGAATGGCAATGGAATTGGGGAGGCCCTCCTCAGACTGGACTCAAGCTTTATGTTTGAAAAACAGGTCTAATCCATTTAAGGCAAATCTGGTGTTGCTTATTTCCATGTCTCTTACAGGTAAAAGAAGATTGAAGGATTTATTGCTTCAGAAAGATAATCAATTTTGTGCTGATTGTAATGCTCCAGATCCTAAATGGGCGTCAGTCAATATTGGAGTTTTTGTATGCTTAAAATGTTGCGGTGTGCACAGAAGTCTTGGTGCCCATATATCGAAGGTTTTGTCTGTGGCATTGGATGAATTGTCAACTGATGAAATAGATTCAATGATTGAAGTTGGAGGAAATTCTTCTGCTAATTCAATTTATGAGGCTTCTATTCCAGAAGGATTTACAAAACCTGGACCAGATTCCAGTCATGATCTGCGTGCAAAATTCATCCGGTCAAAGTATGAGCATCAAGAATTTTTGAAAAGTAGTTTGCGCATTGTGTCAGGAAAAAGCAATCCACCATCAAGTAGTTCCAGAGGAACTGTGAATGATTGTCGAAGTACAAGCGGTTCAAAGAATTTGACAAGAGTGGTCGAATTTATTGGAATGTTGAAGGTGAAAGTGATCAAAGGCACAAATTTAGCTATCAGAGATATGATGACAAGCGATCCATATGTTATCTTCAAACTTGGTCAACAGGTTAGTTGTTCTCAAGTAGTAGATGTTGATAATTTTCTTTCTGAATTGACTTTGGTGCTACAACTTCAGACTGTTCAGACAACTGTAGTAAAGAGTAATTTGAACCCAGTATGGAATGAGGAACTTATGCTATCTGTTACTCCTCAATTTGGACTACTGAATTTGAATGTATTTGATTATGACTTGTTTTCAGCTGATGATATAATGGGGGAAGCAGATATTGATCTTCAGCCCCTGATTACATCTGCAATGTCATTTGGAGATGCTAAAATGTTTGATGATATGCAGATAGGAAAATGGATGAAATCACATGACAATGCGCTTATAGATGACAGTGCAGTCAATATCGTTGGTGGTAAGATTAAACAAGAGATGTCAATCAAGCTCCAGAACGTCGAATCTGGAGAATTAGACTTAGAACTCGAGTGGATACCTCTTGAGCAGTAG 1218 0.3785 MNRTKVVFSGSLAWLLLLELQFERLLASRMAMELGRPSSDWTQALCLKNRSNPFKANLVLLISMSLTGKRRLKDLLLQKDNQFCADCNAPDPKWASVNIGVFVCLKCCGVHRSLGAHISKVLSVALDELSTDEIDSMIEVGGNSSANSIYEASIPEGFTKPGPDSSHDLRAKFIRSKYEHQEFLKSSLRIVSGKSNPPSSSSRGTVNDCRSTSGSKNLTRVVEFIGMLKVKVIKGTNLAIRDMMTSDPYVIFKLGQQVSCSQVVDVDNFLSELTLVLQLQTVQTTVVKSNLNPVWNEELMLSVTPQFGLLNLNVFDYDLFSADDIMGEADIDLQPLITSAMSFGDAKMFDDMQIGKWMKSHDNALIDDSAVNIVGGKIKQEMSIKLQNVESGELDLELEWIPLEQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13306g00002 405 Gene3D C2 domain 225 405 IPR035892 -
Mupr13306g00002 405 Pfam C2 domain 227 339 IPR000008 -
Mupr13306g00002 405 CDD ArfGap 72 178 - -
Mupr13306g00002 405 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 67 265 IPR044518 GO:0005096|GO:0005543
Mupr13306g00002 405 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 266 405 - -
Mupr13306g00002 405 SMART C2_3c 227 345 IPR000008 -
Mupr13306g00002 405 ProSiteProfiles C2 domain profile. 208 346 IPR000008 -
Mupr13306g00002 405 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 219 339 IPR035892 -
Mupr13306g00002 405 SUPERFAMILY ArfGap/RecO-like zinc finger 69 185 IPR037278 -
Mupr13306g00002 405 PRINTS HIV Rev interacting protein signature 121 142 IPR001164 GO:0005096
Mupr13306g00002 405 PRINTS HIV Rev interacting protein signature 81 100 IPR001164 GO:0005096
Mupr13306g00002 405 PRINTS HIV Rev interacting protein signature 100 117 IPR001164 GO:0005096
Mupr13306g00002 405 FunFam stromal membrane-associated protein 1 isoform X1 62 189 - -
Mupr13306g00002 405 SMART arf_gap_3 69 191 IPR001164 GO:0005096
Mupr13306g00002 405 Pfam Putative GTPase activating protein for Arf 70 185 IPR001164 GO:0005096
Mupr13306g00002 405 Gene3D Arf GTPase activating protein 63 189 IPR038508 -
Mupr13306g00002 405 ProSiteProfiles ARF GTPase-activating proteins domain profile. 69 183 IPR001164 GO:0005096
Mupr13306g00002 405 MobiDBLite consensus disorder prediction 191 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13306g00002 Mupr-Chr13306 11447 18154 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13306g00002 67 405 C2H2 Transcription Factor Family AT4G21160 65.805 2.68e-166 468