Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13300g00002 ATGAACTCGGACACGACGTCGTATTGGTGCTACAGCTGCACCCGCTTCGTTCGCATCTTGGAACACCACGAAGTCCTTTGCCCGCACTGCCAAGGCGGCTTCGTCGAAAAGGTCCAAGCTGGTCACCCGCCCGCGGTCTCCCTCTTCGCCGACGGCTTCCACGCGGCCAGGAGGCAGGGATTCCGCCGGAGACGCCACAACGCCGGCACCCACTCGCCGTTCAACCCGGTGATCGTTCTCCGGGGTCCGGGGGACGACGAGGAGAGTAGCTTCGAGCTCTACTACGACGGCGACGACGGCGCGGGTCTCCGGCCGCTGCCGTCCACGATGTCGGAGTTTCTACTCGGATCGGGCTTCGATCGGCTGCTGGAGCAGATCTCTCAGATCGAGATCAACGGCCTCGGGAGGGCGGAGAACCCGCCGGCGTCGAAGGCGGCGATAGAGTCAATGCCGACGGTTCAGATCGCGGAGCCTCAGGTGGCGACGGAGACGCACTGCGCCGTGTGCAAAGAAGCCTTCGAATTAGGTTCCGAGGCGCGTGAGATGCCTTGCAAGCACCTTTACCATTCTGATTGCATTCTCCCGTGGCTCTCGATGCGAAACTCGTGTCCGGTGTGCCGCCACGAGTTACCATCGGAGCAAGCCCCGTCGGAGAGCAGAGTGGCCGGCCAGATCGAGGAGGAGGCGGTGGGGCTCACCATATGGAGGTTGCCGGGCGGCGGATTCGCCGTTGGGAGGTTCGCCGGCGAGAGCCAGTTGCCGGTTGTGTACACCGAGATGGAGAGCGGTGGGAATTCCAACGAAGGTTCTAGAAGAATCTCTCTGGCAGTTGGAAGCGGCAGAGTTAGGGAGAGGCGTGGAATTGGCAGAATTTTCCGCAATTTCTTTGGGAGAATTGGGGCTTTCACTAGAAGCCGGAGCTTTTCAACTTCGTTGTTCAATAGAAGAACAACCGTAACCGCTTCCTCTGATACTGTTGACATTGGTATGACTTTTCCAAAAGGACTCGGTTAA 1014 0.5976 MNSDTTSYWCYSCTRFVRILEHHEVLCPHCQGGFVEKVQAGHPPAVSLFADGFHAARRQGFRRRRHNAGTHSPFNPVIVLRGPGDDEESSFELYYDGDDGAGLRPLPSTMSEFLLGSGFDRLLEQISQIEINGLGRAENPPASKAAIESMPTVQIAEPQVATETHCAVCKEAFELGSEAREMPCKHLYHSDCILPWLSMRNSCPVCRHELPSEQAPSESRVAGQIEEEAVGLTIWRLPGGGFAVGRFAGESQLPVVYTEMESGGNSNEGSRRISLAVGSGRVRERRGIGRIFRNFFGRIGAFTRSRSFSTSLFNRRTTVTASSDTVDIGMTFPKGLG 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13300g00002 337 CDD RING-H2_RNF126-like 166 207 - -
Mupr13300g00002 337 FunFam E3 ubiquitin-protein ligase RING1-like 128 213 - -
Mupr13300g00002 337 SMART ring_2 166 206 IPR001841 -
Mupr13300g00002 337 SUPERFAMILY RING/U-box 146 212 - -
Mupr13300g00002 337 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 56 211 - -
Mupr13300g00002 337 ProSiteProfiles Zinc finger RING-type profile. 166 207 IPR001841 -
Mupr13300g00002 337 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Mupr13300g00002 337 Pfam Protein of unknown function (DUF1117) 230 317 IPR010543 -
Mupr13300g00002 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 213 IPR013083 -
Mupr13300g00002 337 Pfam Ring finger domain 165 207 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13300g00002 Mupr-Chr13300 8954 10653 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13300g00002 95 218 C3H Transcription Factor Family AT5G01980 41.935 5.68e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13300g00002 K11982 - gmx:100784822 492.271