Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13272g00006 ATGGACTCTTCTTCGTCACCGCCCAACAACCTCGCTTTCTCTCTTTCCAACCACTTTCCCAATCCTTCTTCCTCACACTCTTCTTCTCCTCTCTCCCTTTTCCACTCTTTCACCTATCCATCCCTTACACTCACAGGCAGCAACACGGTGGATGCAGCCCCGGAGGGAGGTCCGACCAACCTCTCCGTAATCACCGGCGAGCCCAAGTTCGAGGACTTTCTGGGCGGCTCCGCCACCGCCAACACGTGTGCACCGCCACAGCTTCCGCAGTTTTCCACCGACAACAACAACCTATACGATTCAGAGCTGAAGACAACAATAGCGGCGTGCTTCCCTCGCGGCTTCGCCGCCGAACCAACCACCGAGCCGCAAAAACCCTCCCCCAAGAAAACCGTCGACACCTTTGGCCAGCGCACGTCCATCTACCGCGGCGTCACCCGACATAGGTGGACCGGGAGATATGAAGCTCATCTATGGGATAACAGTTGTAGGAGGGAAGGACAAAGTAGGAAAGGAAGACAAGGTGGTTATGACAAGGAAGATAAGGCAGCCAGAGCTTACGATCTCGCAGCTCTCAAGTACTGGGGTCCAACTACCACCACCAACTTTCCAATTTCCAACTATGAGAAGGAACTGGGGGAGATGAAGAACATGACCAGGCAAGAGTTTGTTGCTTCTCTACGAAGAAAGAGCAGTGGTTTCTCTAGGGGGGCCTCTATATACAGAGGAGTGACGAGACATCACCAGCATGGCCGATGGCAGGCGAGAATAGGCAGAGTTGCCGGAAACAAAGACCTCTACCTTGGCACCTTCAGCACCCAAGAAGAAGCTGCGGAGGCCTATGACATTGCAGCTATCAAATTCAGGGGGTTAAATGCAGTGACAAACTTCGACATGAGTCGGTACGACGTAAAGAGCATTGCAAATAGCACACTCCCCATTGGGGGGTTATCGAGCAAGAACAAAAGCTCGACAGAGTCTGCATCTGAGTGCAAAAGTCACGAGGCAAGTCGATCAGACGATCGAGATCCATCATCAGGCTCATCCGTGACCTTTGGATCACAGCAACAACCTTCAAGCTCCACCTTAAGCTTCGCCATACCCATTAAGCAAGACCCTTCAGATTACTGGTCCATCCTAGGGTACCATAATCATAACCACAATCAGAACCCTCCCCTTGACAGGAACACTAGCACAACTTGTTTTGCATCTTCCAACAATGGCATGACACCCTTCCACGTGGAGTTCTCGGGTGCCCCCTCAAGTACCGGCAGTGATAATAACAATGCCGCGTATTTCAGTGGAGGCATGTTTGTTCAGCAACAGAGTGGTGGTGGAAGTGGAAGCAGTGGCTCCTCTTCTTCTTTAAGCTGTTCAATCCCGTTCGCCACGCCCATATTTTCTCTAAATAGTAACACTAGTTATGAGAGCAGTGCTGGTTATGGAAACTGGATTGGACCTACCCTGCACACATTCCAATCCCATGCAAAACCGAGTCTCTTTCAAACGCCAATATTCGGCATGGAATGA 1530 0.5118 MDSSSSPPNNLAFSLSNHFPNPSSSHSSSPLSLFHSFTYPSLTLTGSNTVDAAPEGGPTNLSVITGEPKFEDFLGGSATANTCAPPQLPQFSTDNNNLYDSELKTTIAACFPRGFAAEPTTEPQKPSPKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEDKAARAYDLAALKYWGPTTTTNFPISNYEKELGEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIANSTLPIGGLSSKNKSSTESASECKSHEASRSDDRDPSSGSSVTFGSQQQPSSSTLSFAIPIKQDPSDYWSILGYHNHNHNQNPPLDRNTSTTCFASSNNGMTPFHVEFSGAPSSTGSDNNNAAYFSGGMFVQQQSGGGSGSSGSSSSLSCSIPFATPIFSLNSNTSYESSAGYGNWIGPTLHTFQSHAKPSLFQTPIFGME 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13272g00006 509 SUPERFAMILY DNA-binding domain 239 300 IPR016177 GO:0003677
Mupr13272g00006 509 ProSiteProfiles AP2/ERF domain profile. 240 298 IPR001471 GO:0003700|GO:0006355
Mupr13272g00006 509 MobiDBLite consensus disorder prediction 343 362 - -
Mupr13272g00006 509 MobiDBLite consensus disorder prediction 1 27 - -
Mupr13272g00006 509 PRINTS Ethylene responsive element binding protein signature 142 153 IPR001471 GO:0003700|GO:0006355
Mupr13272g00006 509 PRINTS Ethylene responsive element binding protein signature 280 300 IPR001471 GO:0003700|GO:0006355
Mupr13272g00006 509 MobiDBLite consensus disorder prediction 313 362 - -
Mupr13272g00006 509 FunFam AP2-like ethylene-responsive transcription factor 239 300 - -
Mupr13272g00006 509 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 69 387 - -
Mupr13272g00006 509 SMART rav1_2 240 304 IPR001471 GO:0003700|GO:0006355
Mupr13272g00006 509 SMART rav1_2 141 210 IPR001471 GO:0003700|GO:0006355
Mupr13272g00006 509 MobiDBLite consensus disorder prediction 327 342 - -
Mupr13272g00006 509 CDD AP2 239 300 IPR001471 GO:0003700|GO:0006355
Mupr13272g00006 509 ProSiteProfiles AP2/ERF domain profile. 141 204 IPR001471 GO:0003700|GO:0006355
Mupr13272g00006 509 Gene3D AP2/ERF domain 141 206 IPR036955 GO:0003700|GO:0006355
Mupr13272g00006 509 Gene3D AP2/ERF domain 240 300 IPR036955 GO:0003700|GO:0006355
Mupr13272g00006 509 FunFam AP2-like ethylene-responsive transcription factor ANT 140 206 - -
Mupr13272g00006 509 CDD AP2 140 206 IPR001471 GO:0003700|GO:0006355
Mupr13272g00006 509 SUPERFAMILY DNA-binding domain 140 206 IPR016177 GO:0003677
Mupr13272g00006 509 Pfam AP2 domain 240 290 IPR001471 GO:0003700|GO:0006355
Mupr13272g00006 509 Pfam AP2 domain 141 196 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13272g00006 Mupr-Chr13272 44372 47421 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13272g00006 74 509 AP2-EREBP Transcription Factor Family AT5G57390 54.348 2.96e-139 407
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Mupr13272g00006 AP2 6.1e-09 CL0081