Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13203g00002 ATTTCCTTAGTAATGAAGAGGCAGAGAGATAATGAAGGGTCAGGGATGGTAGATGTGGCGAATTATCTTATGTTGTTCTCTTGTCCACGTGAAAGCAACGAGATGCAACAGAAAAGTTTCGGGGCCGTGGAATTTGAGTGCAAAACATGTAAGCGCAAGTTCTCGTCTTTTCAAGCACTTGGTGGGCACAGGGCTAGCCACAAGAGGCAGAAACTGGATGGGGAAGAACTCAAAGAAGAGGCAAAAAGTCTTAGGTTGTGGAACAAACCCAAAATGCACGAGTGCTCCATTTGTGGTCTCGGATTCTCTCTGGGCCAGGCCCTGGGAGGCCACATGAGAAAACACAGAGCTCAAATCCATGAAGGCTTTCCTTCTATCGAGCAAGTTATTGCAAAAAGCCCAGTTCTCAAAAGATCCAATAGCACCAGAGTTATGTGCTTGGACTTGGAGTTACACCTATTATTGATTCTTTATTAA 477 0.4486 ISLVMKRQRDNEGSGMVDVANYLMLFSCPRESNEMQQKSFGAVEFECKTCKRKFSSFQALGGHRASHKRQKLDGEELKEEAKSLRLWNKPKMHECSICGLGFSLGQALGGHMRKHRAQIHEGFPSIEQVIAKSPVLKRSNSTRVMCLDLELHLLLILY 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13203g00002 158 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Mupr13203g00002 158 Pfam C2H2-type zinc finger 93 118 - -
Mupr13203g00002 158 Pfam C2H2-type zinc finger 45 70 - -
Mupr13203g00002 158 SMART c2h2final6 45 67 IPR013087 -
Mupr13203g00002 158 SMART c2h2final6 93 115 IPR013087 -
Mupr13203g00002 158 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Mupr13203g00002 158 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Mupr13203g00002 158 SUPERFAMILY beta-beta-alpha zinc fingers 45 115 IPR036236 -
Mupr13203g00002 158 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Mupr13203g00002 158 PANTHER ZINC FINGER PROTEIN ZAT5 20 151 - -
Mupr13203g00002 158 Gene3D Classic Zinc Finger 43 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13203g00002 Mupr-Chr13203 10373 10945 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13203g00002 5 151 C2H2 Transcription Factor Family AT2G37430 42.581 6.91e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr13203g00002 zf-C2H2_6 2.1e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13203g00002 - - gmx:100500607 243.432