Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13172g00001 ATGGTTTCTGCGGAGAAGGATTCCAACGGAACCACTCAGTCCACCATTTCAAGCAAAACTCAGCGACACATAGGGAGGTCCATGCGAACGGTGCGCTCCACTATATTCCAACGCGACCACGCCGCTTGCGTCTCCGACACCTTAACCGATTCGCTCGTGGAACTGGCCTCGCGAAACACCAAATCCGTTAAATCTTCCGTTACTGAGGAACAACTTCTCGAGCTGTCTCAAGCTTTGAGCGATTTCTCGGCCTGTAGCAGCGATATCTCGGGGGAGCTCCAGAGGCTCGCCACTGTCTCCGAACCCGAACCTGCTGCTGACGTGGACCGCGAACCCGAGCCCGAGCCCTGCCTAGGTTTTCTTCAAAGGGAGAGTTTCTCTACCGAGATTGTGGACAATATTTCCCCCGAGGATCTTCAGCCGACGGTGAAGATCTGCGTGGATGGACTACAGTCGTCGTCGGTGGCGGTGAAGCGATCCGCGGCGGCGAAGCTGAGGCTGTTGGCGAAGAACCGGGAGGATAACCGTGCTCTGATAGGTGAGTCCGGTGCGGTCCCTGCTTTGGTTCCGCTGCTCCGGTGCAGCGATCCGTGGACGCAGGAACACGCTGTGACGGCGTTGCTGAATCTGTCTCTTCTGGAGGAGAACAAGGTGGTGATAACAAATGCGGGTGCGGTGAAGGGGCTGATTTACGCGCTGAAGACAGGGACGGAGACTTCGAAGCAGAACGCGGCTTGCGCGCTTATGAGCCTGGCGTTGGTGGAAGAGAACAAGAGCTCCATCGGCGCCTGCGGGGCGATACCGCCGCTGGTTTCGCTGCTGCTGGGCGGTTCCAACAGAGGGAAGAAGGACTCGCTGACGACGCTGTACAAGCTGTGTTCGGTGAGGCAAAACAAGGAGAGGGCGGTGAGCGCCGGGGCGGTGAGGCCGCTGGTGGAGCTGGTGGCGGAGCAGGGGAGTGGCATGGCGGATAAGGCGATGGTGGTGCTGAATAGCTTGGCCGGTATTGAGGAGGGGAAGGAGGCCATTGTGGAAGAAGGTGGGATAGCTGCTCTTGTTGAAGCTATTGAAGATGGGTCGGTGAAGGGAAAGGAGTTCGCTGTTTTGACTCTTGTTCAGCTCTGTGCCCAAAGCATTACCAACAGAGCCTTGCTTGTTAGGGAGGGTGGGATTCCTCCTCTCGTTGCTCTTTCTCAGAACGGCTCTGTTCGAGCTAAGCACAAGGCTGAGACACTCCTTGGATATTTGAGAGAATCAAGACATGAAGCGTCCAGTTCAAGTCCTTAG 1287 0.5688 MVSAEKDSNGTTQSTISSKTQRHIGRSMRTVRSTIFQRDHAACVSDTLTDSLVELASRNTKSVKSSVTEEQLLELSQALSDFSACSSDISGELQRLATVSEPEPAADVDREPEPEPCLGFLQRESFSTEIVDNISPEDLQPTVKICVDGLQSSSVAVKRSAAAKLRLLAKNREDNRALIGESGAVPALVPLLRCSDPWTQEHAVTALLNLSLLEENKVVITNAGAVKGLIYALKTGTETSKQNAACALMSLALVEENKSSIGACGAIPPLVSLLLGGSNRGKKDSLTTLYKLCSVRQNKERAVSAGAVRPLVELVAEQGSGMADKAMVVLNSLAGIEEGKEAIVEEGGIAALVEAIEDGSVKGKEFAVLTLVQLCAQSITNRALLVREGGIPPLVALSQNGSVRAKHKAETLLGYLRESRHEASSSSP 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13172g00001 428 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 183 225 IPR000225 GO:0005515
Mupr13172g00001 428 Gene3D - 287 427 IPR011989 -
Mupr13172g00001 428 Pfam Armadillo/beta-catenin-like repeat 256 294 IPR000225 GO:0005515
Mupr13172g00001 428 Pfam Armadillo/beta-catenin-like repeat 174 211 IPR000225 GO:0005515
Mupr13172g00001 428 MobiDBLite consensus disorder prediction 1 27 - -
Mupr13172g00001 428 Gene3D - 124 286 IPR011989 -
Mupr13172g00001 428 SMART arm_5 377 418 IPR000225 GO:0005515
Mupr13172g00001 428 SMART arm_5 254 294 IPR000225 GO:0005515
Mupr13172g00001 428 SMART arm_5 172 212 IPR000225 GO:0005515
Mupr13172g00001 428 SMART arm_5 336 376 IPR000225 GO:0005515
Mupr13172g00001 428 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 306 348 IPR000225 GO:0005515
Mupr13172g00001 428 FunFam U-box domain-containing protein 4 282 423 - -
Mupr13172g00001 428 PANTHER U BOX DOMAIN-CONTAINING 65 416 - -
Mupr13172g00001 428 FunFam U-box domain-containing protein 4 129 281 - -
Mupr13172g00001 428 SUPERFAMILY ARM repeat 133 417 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13172g00001 Mupr-Chr13172 6348 8587 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13172g00001 138 421 U-box Gene Family AT2G23140 50.000 2.06e-80 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13172g00001 - - gmx:100792402 669.848