Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13146g00001 ATGCAGCGTGAGGGTGAGCAACGAACTAGGAGCAAGAAATCCAAAATCAGCCTCGTTTTCGGTGATAGTGTTATTGCAGCACTGGTGGTCCTTGCATTAAGGGATGTCATTAGCTATGCCTTCACAGGTGGTGAAGAGGTTGCTGCTGCTGTTTCTGATCTTTGCCCTCTTCTTTCTCTCTCTCTTCTCCTCAATGGCATTCAACCCGTCTTATCCGGGGTGGCTGTTGGATGTGGATGGCAAACTTTCGTAGCTTATGTAAATGTGGGTTGTTATTATGGAGTTGGCATACCATTGGGTTCGGTTTTCGGCTTTTATTTCAAATTTGGTGCCAAGGGAATATGGCTGGGAATGCTAGGTGGCACCGTTATGCAGACAATTATTCTGATGTGGGTGACATTTAGAACGGATTGGAATAAGGAGGTAGAGGAAGCAGCCAAGAGGTTGAGCAAATGGGAGGACAACAAGGAGCCACTTAAATTTATGATTTTGCACCTTTTGACATGGATTTGGGTATGTGGGACTGCTCACAGCAGAAGACCTGACAGCGTGAACATTGGTGCGGTTTTTGCTTTCGATTCCGTCATAGGTAGAGTTGCGAAGGAGGCTATGAAAATGGCCGTATCTGATGTCAATAAGGACCCCACAGTACTTGAGAAAGGGGTTGCAGCTATAATTGGTCCACAGTCATCTTCCGTAGCTCACACGGTTTCTCAAATTGCTGATGCTCTCCAAGTTCCTCTTGTTTCATATGCTGCCACTGATCCAACCCTGTCCTCCCTCCAGTTTCCTTTCTTTATTCGTACTATGCAAAGTGACTTGGCACAAATGACTGCGATGGCTGATCTAATTGACTTAAATGGATGGAAAAAGGTCATTGCTGTATTCTTGGATGATGATTATGGAAGAAATGGAATATCTGCTTTGAGTGATGAACTTGAAAAAAGGAGATTGAAAATTTCTTATAAACTGCCTTTCAGTATCAAGTTTGATCTGGATGAAATCACTAACTTGCTCAATCAATCCAAATTGTATGGTCCTCGTGTGTATGTTGTTCATGTCAATCCTGATCCGAGATTGAGAATTTTTTCCATTGCCCATAAACTTCAAATGATGGGCAAGGATTATGTCTGGCTTGTCACGGATTGGCTCTCGACTACACTGGATTCATTATCCCCAGTGAATCAGACCTCTTTCAGTATTCTCCAAGGGGTTGTTGGTCTTCGTCAACACATTCCGGATTCCATACAAAAGAGAGCTTTTGCTTCTCGATGGATAAAAATGCAAAGAGGAGTAGCAAATACTAGTTTGAACTCCTATGGATTTTATGCTTATGATACAGTTTGGGCAGTTGCATTTGCAATCGATAAATTCATCAAAGTACATGATAATATTACCTTCTTGCTTCCTGATAACTATAAGCTATCTCATACAGAAGGAATTGGTATTCAGCTTGACAAACTCAAAATCCTTGCTGGTGGATCTGATCTAGTTGACATATTATTACAATCAAATTTTACTGGTGTGAGCGGTCAACTTGAGTTTAATTCTGACAGAAATATTGTAAGTGGTGGTTATGATATTATCAATGTCAATCAGATGGCAATTACTAAGGTTGGCTTTTGGTCTAATTATTCAGGATTTTCAGTTGTACCCCATGAAGCTCTTAAAAAGAGGGAACATAACAGGTTTTCCCAAGATCAGAAGCTTGGCAATATTACTTGGCCAGGTGGAAAGACAGAACGACCTCGTGGCTGGGTGATTGCTGATAATACCAAACCACTGAGAATTGGAGTGCCAAAAAGAGCAAGTTTTGTTGAATTCGTAACTGAACTGCAAGATAGTCATCAAATTCAGGGGTACTCTATTGATATCTTCAAGAAAGCCCTAGAATATATTCCATATGAAGTTCCTTATGTATTCAAGCCTTTTGGGAATGGTAAAGCAAATCCCAATTATGATGCACTTGTGAATATGGTTGCTGAAAATGTATATGATGCGGTTGTTGGAGACATTGCAATTGTGGCAAACCGTACGAGGATTGTGGATTTTTCTCAGCCTTTTGCATCATCTAGCCTTGTCATAGTGGCTCCTATTAACAAATCAGGATCAAATGCTTGGGTGTTCCTCAAACCATTTACAGCCGATATGTGGTGTGTCACTGCTGCATCATTTTTAGTGGTTGGAGTGGTTGTATGGATACTTGAGCACCGAATCAATAATGACTTCCGCGGTCCTCCTAAGAAGCAAATTGTGACAATGTTAATGTTCAGCCTCTCAACACTGTTTAAGAAAAATCAGGAAGATACCGTAAGCTCACTTTCTAAAATGGTGATGATAGTCTGGCTTTTTCTATTGATGGTGATCACAGCTAGCTACACAGCGAGCTTAACTTCAATCCTTACAGTGGAGCAGCTTACGTCGCCCATCACAGGAATTGATAGCTTGATTACAAGTAAGTGGCCTATCGGATACCAAGTAGGCTCATTTGCTTACAGCTATCTGGCAGATAATCTTTATGTAGCAAAATCAAGACTTGTTTCCCTAGGCTCCCCTGAGGAATATGCTACAGCGCTGCAGAAGGGACCGTCCGGTGGAGGGGTGGCAGCTATTGTTGATGAGCTTCCTTATGTTGAGTTGTTTCTGTCAAAAGAAACTGATTTTGGTATTATCGGACAGCCATTCGCCAGAAGCAGTTGGGGATTTGCATTTCAAAGAGACTCTCCTCTTGCCTTTGACATGTCTACAGCAATTTTGAAGCTCTCCGAGCATGGAGATCTTCGTAAGATACACGAAAAGTGGTTCTGTAAAATGGGTTGTCCTGAAGAAAGGAGTAGTAACTCCAAGCCAGACCAGCTTCACTTAGTAAGCTTTTGGGGTCTGTATCTCTCATGTGGTGTTGTCTCTCTTGCTGCACTTGTGCTGTTTTTGCTGCGAATGATTCGCCAATATGCGCGCTTCAAAAAGAGACAAAAGGATAGTGCTTCTTCATCCTCAGAACCATCGGGCATTCATTGTTCCCAGGTTGTTGTTAACTTCTTTGACTTCATTGATGAGAAGGAAGAGGCCATTAAGAAAATGTTCACTCCGGCTTTTCTCACAAATGGAGGTGGTCACAAGAATGTGGTTGTGGGAAGGACAGGAAATAGCATCACAAACTCTAGTACTTCTTCTACACCAAGAGTTTTGAAAGTTGGAGCACTGTTTACTCTTAATTCTATAATTGGAAGATCGGCTAAACCTGCACTTCTGGCTGCTATCGATGATGTTAATGCTAATTCCAATGTTCTCCCTGGCATTAAACTGGAAGTTCTTTTACATGATACAAATTGCAGCGGGTTTGTTGGGACAATGGAAGCTTTGGAGTTGATGGAGAATGAAGTGGTTGCTGCCATTGGTCCACAGTCCTCAGGAATAGCCCATGTCATTTCTCATGTTAACAGTGAACTCCATGTCCCTCTTGTTTCATTTGCAACAGACCCTTCTCTAACTTCCCTTCAGTACCCATATTTTGTTCGCAGCACCCAAAGTGACTACTATCAGATGTATGCAATTGCAGACTTGGTTGATTACTATAGATGGAGGGAGGTAATTGCCATATTTGTAGATGATGACAATGGAAGGAATGGAATTGCAGTACTTGGAGATGCTTTGTCAAAGAAACGTGCCAAGATCTCTTACAAGGCCGCATTCCCTCCTGGTGCCCTCAAGAAAGACATTGGTGATTTGTTAAATGGAGTGAACCTAATGGAATCACGTGTCTTTGTTCTGCATGTTAATCCTGATACTGGTGTCAACATTTTCTCTATTGCTCAGAAGCTAGGAATGATGAATAGCGGTTATGTGTGGATTGCAACAGATTGGCTTGCTTCAACACTTGATTCATTGGAGCCAGTTGATCCTAACATAATGAATCTCCTACAAGGGGTTTTGGTTTTGAGGCAACACACTCCTGATACTAATGAGAAGAAGAGTTTTCTCTCCAGGATGAAGAGACTAAATGACAAGGAGACTCCAAGCTTCAATTCCTATGCATTATATGCATATGATTCTGTTTGGATAGTGGCTCGTGCTCTTGATGCTTTTCTCAAAGAAGGTGGTGTGGTGTCTTTCTCCTCTGACCCTAAGTTGCGCGACACAAATGGAAGCATGTTGCATTTGCAATCACTTCGTGTTTTTGATAATGGCTCTACGTTTCTCGAGACAGTTTTAAGAACCAACTTCACTGGTCTGAGTGGACAAGTTCTATTTGACGTGGAAAGGAATAGAATTCATCCAGCATATGATATCTTGAATATTGCTTCATCTGCCATGAGGAGAATTGGTTATTGGTCTAACTACTCAGGCCTCTCAGTTGTGGCTCCAGAAATTTTGTATAAGAAACCACCTAACACTTCAACAAGCAGCCAGCAACTGTATGGTGTTATATGGCCTGGAGAAACTACAGCTAAACCAAGAGGGTGGGTGTTCCCTAACAATGGAAAGCCTCTTAGAATCGCTGTGCCTAATCGAGTAAGCTACTTGGAGTTTCTTTCTAAAGACAAGAACCCTCCTGGAGTAAAAGGCTATTGCATTGATGTCTTTGAAGCTGCCATTAACTTATTGCCTTATCCTGTCCCGCGACAATATATACTATTTGGAAATGGTAATAGAAATCCCAGCTATGATGACCTTGCAAATCAGGTTGCACAAAATAACTATGATGCAGCTGTTGGTGATGTTACAATTGTACCAAACAGGACAAGGTTTTTGGATTTTACTCAACCTTACATGGAATCAGGCCTGGTTGTTGTTGTTCCTGTCAGGGAGATCAAATCAAGTCCTTGGTCTTTCCTCCAGCCCTTCACTGCTCAAATGTGGTGTGTTACTGGTGCCTTTTTTATCTTTGTGGGAACCGTTGTATGGATTCTTGAGCACCGGCACAATCCCGAGTTTCGTGGTAGACCCAAGAAACAACTCATGACAGTCTTTTGGTTTAGTTTCTCAACAATCTACACAGCTAGCTTAACATCCATCCTCACAGTGCAGCAAATTTCATCACAAATTGAAGGAATTGACAGCTTGATCTCAAATACTCAACCAATTGGAATTCAAGAAGGGACATTTGCTCGCAAGTATTTGACAGAGGAACTCAATATACAACCATCAAGGCTAGTTACGTTGAAAAATATGGAGGCATATATTGATGCCCTTGAGCGTGGACCAAAAGATGGAGGGGTTGCGGCCGTTGTTGATGAGCTTCCTTATATTGAAATCTTATTGTCAAGTACCAACTGTAGGTTCAGAACCGTTGGGCAGGAGTTCACTAAAAGTGGTTGGGGATTTGCATTCCAGAGGGACTCTCCCCTGGCTGTTGACATGTCAACTGCCATTCTTCAACTATCAGAGAATGGTGACCTGCAAAAGATCCATGACAAATGGCTTCTAAAACATGATTGTTCTGCACAAGATAATGTTGATTCAAATAAACTATCTCTGAGTAGCTTCTGGGGTCTCTTTCTTATATGTGGCATTGCATGTTTTATTTCTTTGATTGTATTCGCCATTAGAGTGCTATGTCAATACACTAAATTCAACCCAGAATCTGAGCAAGATGATGAAGAAATTTCACCAAATAGGCCAAAAACTAGAGGACCTCTCCGAACCACTACTAGCTTCAGGGACTTGATTTATTTTGTGGATAAGAAAGAAAAAGAAATCAAAGAGATACTTAAGCAGAAGAGTAAGAAAAGGAGACGCAGCCTGAGCTCAGATGGCCAATCTGGTTCACCCACCTAA 5778 0.4169 MQREGEQRTRSKKSKISLVFGDSVIAALVVLALRDVISYAFTGGEEVAAAVSDLCPLLSLSLLLNGIQPVLSGVAVGCGWQTFVAYVNVGCYYGVGIPLGSVFGFYFKFGAKGIWLGMLGGTVMQTIILMWVTFRTDWNKEVEEAAKRLSKWEDNKEPLKFMILHLLTWIWVCGTAHSRRPDSVNIGAVFAFDSVIGRVAKEAMKMAVSDVNKDPTVLEKGVAAIIGPQSSSVAHTVSQIADALQVPLVSYAATDPTLSSLQFPFFIRTMQSDLAQMTAMADLIDLNGWKKVIAVFLDDDYGRNGISALSDELEKRRLKISYKLPFSIKFDLDEITNLLNQSKLYGPRVYVVHVNPDPRLRIFSIAHKLQMMGKDYVWLVTDWLSTTLDSLSPVNQTSFSILQGVVGLRQHIPDSIQKRAFASRWIKMQRGVANTSLNSYGFYAYDTVWAVAFAIDKFIKVHDNITFLLPDNYKLSHTEGIGIQLDKLKILAGGSDLVDILLQSNFTGVSGQLEFNSDRNIVSGGYDIINVNQMAITKVGFWSNYSGFSVVPHEALKKREHNRFSQDQKLGNITWPGGKTERPRGWVIADNTKPLRIGVPKRASFVEFVTELQDSHQIQGYSIDIFKKALEYIPYEVPYVFKPFGNGKANPNYDALVNMVAENVYDAVVGDIAIVANRTRIVDFSQPFASSSLVIVAPINKSGSNAWVFLKPFTADMWCVTAASFLVVGVVVWILEHRINNDFRGPPKKQIVTMLMFSLSTLFKKNQEDTVSSLSKMVMIVWLFLLMVITASYTASLTSILTVEQLTSPITGIDSLITSKWPIGYQVGSFAYSYLADNLYVAKSRLVSLGSPEEYATALQKGPSGGGVAAIVDELPYVELFLSKETDFGIIGQPFARSSWGFAFQRDSPLAFDMSTAILKLSEHGDLRKIHEKWFCKMGCPEERSSNSKPDQLHLVSFWGLYLSCGVVSLAALVLFLLRMIRQYARFKKRQKDSASSSSEPSGIHCSQVVVNFFDFIDEKEEAIKKMFTPAFLTNGGGHKNVVVGRTGNSITNSSTSSTPRVLKVGALFTLNSIIGRSAKPALLAAIDDVNANSNVLPGIKLEVLLHDTNCSGFVGTMEALELMENEVVAAIGPQSSGIAHVISHVNSELHVPLVSFATDPSLTSLQYPYFVRSTQSDYYQMYAIADLVDYYRWREVIAIFVDDDNGRNGIAVLGDALSKKRAKISYKAAFPPGALKKDIGDLLNGVNLMESRVFVLHVNPDTGVNIFSIAQKLGMMNSGYVWIATDWLASTLDSLEPVDPNIMNLLQGVLVLRQHTPDTNEKKSFLSRMKRLNDKETPSFNSYALYAYDSVWIVARALDAFLKEGGVVSFSSDPKLRDTNGSMLHLQSLRVFDNGSTFLETVLRTNFTGLSGQVLFDVERNRIHPAYDILNIASSAMRRIGYWSNYSGLSVVAPEILYKKPPNTSTSSQQLYGVIWPGETTAKPRGWVFPNNGKPLRIAVPNRVSYLEFLSKDKNPPGVKGYCIDVFEAAINLLPYPVPRQYILFGNGNRNPSYDDLANQVAQNNYDAAVGDVTIVPNRTRFLDFTQPYMESGLVVVVPVREIKSSPWSFLQPFTAQMWCVTGAFFIFVGTVVWILEHRHNPEFRGRPKKQLMTVFWFSFSTIYTASLTSILTVQQISSQIEGIDSLISNTQPIGIQEGTFARKYLTEELNIQPSRLVTLKNMEAYIDALERGPKDGGVAAVVDELPYIEILLSSTNCRFRTVGQEFTKSGWGFAFQRDSPLAVDMSTAILQLSENGDLQKIHDKWLLKHDCSAQDNVDSNKLSLSSFWGLFLICGIACFISLIVFAIRVLCQYTKFNPESEQDDEEISPNRPKTRGPLRTTTSFRDLIYFVDKKEKEIKEILKQKSKKRRRSLSSDGQSGSPT 1925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13146g00001 1925 Pfam Ligand-gated ion channel 1810 1840 IPR001320 GO:0015276|GO:0016020
Mupr13146g00001 1925 Pfam MatE 16 100 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Mupr13146g00001 1925 SMART GluR_14 1498 1810 IPR001320 GO:0015276|GO:0016020
Mupr13146g00001 1925 SMART GluR_14 594 937 IPR001320 GO:0015276|GO:0016020
Mupr13146g00001 1925 Gene3D - 1690 1811 - -
Mupr13146g00001 1925 FunFam Glutamate receptor 1177 1333 - -
Mupr13146g00001 1925 SUPERFAMILY Periplasmic binding protein-like II 1473 1809 - -
Mupr13146g00001 1925 CDD GluR_Plant 593 935 - -
Mupr13146g00001 1925 FunFam Glutamate receptor 1492 1608 - -
Mupr13146g00001 1925 FunFam Glutamate receptor 1704 1812 - -
Mupr13146g00001 1925 Coils Coil 135 155 - -
Mupr13146g00001 1925 CDD PBP1_GABAb_receptor_plant 1064 1454 IPR044440 -
Mupr13146g00001 1925 Gene3D - 1492 1607 - -
Mupr13146g00001 1925 Coils Coil 1893 1913 - -
Mupr13146g00001 1925 MobiDBLite consensus disorder prediction 1862 1881 - -
Mupr13146g00001 1925 Gene3D - 217 523 - -
Mupr13146g00001 1925 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1064 1869 IPR015683 -
Mupr13146g00001 1925 Gene3D - 883 942 - -
Mupr13146g00001 1925 Pfam Ligand-gated ion channel 936 967 IPR001320 GO:0015276|GO:0016020
Mupr13146g00001 1925 MobiDBLite consensus disorder prediction 1905 1925 - -
Mupr13146g00001 1925 Gene3D - 592 705 - -
Mupr13146g00001 1925 SUPERFAMILY Periplasmic binding protein-like II 573 935 - -
Mupr13146g00001 1925 CDD PBP1_GABAb_receptor_plant 185 552 IPR044440 -
Mupr13146g00001 1925 SUPERFAMILY Periplasmic binding protein-like I 1058 1489 IPR028082 -
Mupr13146g00001 1925 CDD GluR_Plant 1495 1808 - -
Mupr13146g00001 1925 Gene3D - 1082 1425 - -
Mupr13146g00001 1925 FunFam Glutamate receptor 706 844 - -
Mupr13146g00001 1925 Gene3D - 706 835 - -
Mupr13146g00001 1925 Gene3D - 1608 1664 - -
Mupr13146g00001 1925 Pfam Bacterial extracellular solute-binding proteins, family 3 606 935 IPR001638 -
Mupr13146g00001 1925 FunFam Glutamate receptor 272 428 - -
Mupr13146g00001 1925 Pfam Bacterial extracellular solute-binding proteins, family 3 1554 1809 IPR001638 -
Mupr13146g00001 1925 FunFam Glutamate receptor 832 939 - -
Mupr13146g00001 1925 SUPERFAMILY Periplasmic binding protein-like I 179 587 IPR028082 -
Mupr13146g00001 1925 Gene3D - 272 548 - -
Mupr13146g00001 1925 Gene3D - 1177 1450 - -
Mupr13146g00001 1925 FunFam Glutamate receptor 590 706 - -
Mupr13146g00001 1925 Pfam Receptor family ligand binding region 220 532 IPR001828 -
Mupr13146g00001 1925 Pfam Receptor family ligand binding region 1080 1434 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13146g00001 Mupr-Chr13146 4046 24721 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13146g00001 179 902 Ion Channels AT1G05200 49.202 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13146g00001 K05387 - gmx:100799912 1543.87