Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13139g00001 ATGTCCGCAGCTCTGGATATGACGCTCGACGACATCATCAAGAACAACAAAAAATCTGGATCCGGAAACTTCCGTGGCCGGTCCCGACCCTCCGGATCCGGACCTGGTCCTTCTCGCCGATTACCCAACCGTGCCGCCAACCGTGCTGTACCTTATGCCACCGCTAAGGCGCCGGAGGCGACGTGGCAGCACGATTTGTATGCAGATCAGCATGTGACTGTGGCAGGGTTCCCGGCTCAAGGTGGTCCTGCGTCTTCCATAGAAACTGGGACCAAGCTTTTCATTTCCAATTTGGACTATGGTGTTTCCAACGATGATATTAAGGAATTGTTTGCTGAAGTTGGTGACATAAAACGGCATGTGGTTCATTATGATAGGAGTGGCAGATCCAAGGGTACAGCAGAAGTAGTGTTTTCACGACGAGCTGATGCTGTAGCTGCTGTAAAGAGATACAACAATGTTCAATTAGATGGGAAACCAATGATGATAGAGATTGTGGGAACAAACATTTCTACACCTGGTGTAGCTCCTGCTGTAAATGGCGCTATTGGAAATTTGAATGGAGTTCCTCGAAGTGGACAAGGAAGAGATGGGGCATTAAGAAGGTCGGGTGGGAGAGGGCAAGGCATTCGAAGGGATCGAGGACGGGGAAGAGGTCGTGGTGGAGGAGGCCGTGGTGGAGGAGGTCGTGGTGAAAAGTTATCTGCAGATGATCTTGATGCTGATTTGGAGAAGTATCATGCAGAGGCAATGCAATTGAAC 762 0.5 MSAALDMTLDDIIKNNKKSGSGNFRGRSRPSGSGPGPSRRLPNRAANRAVPYATAKAPEATWQHDLYADQHVTVAGFPAQGGPASSIETGTKLFISNLDYGVSNDDIKELFAEVGDIKRHVVHYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMMIEIVGTNISTPGVAPAVNGAIGNLNGVPRSGQGRDGALRRSGGRGQGIRRDRGRGRGRGGGGRGGGGRGEKLSADDLDADLEKYHAEAMQLN 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13139g00001 254 SUPERFAMILY RNA-binding domain, RBD 21 164 IPR035979 GO:0003676
Mupr13139g00001 254 SMART FoP_duplication_2 182 254 IPR025715 -
Mupr13139g00001 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 161 IPR000504 GO:0003723
Mupr13139g00001 254 MobiDBLite consensus disorder prediction 206 220 - -
Mupr13139g00001 254 FunFam THO complex subunit 4 84 236 - -
Mupr13139g00001 254 MobiDBLite consensus disorder prediction 185 240 - -
Mupr13139g00001 254 CDD RRM_THOC4 91 165 - -
Mupr13139g00001 254 SMART rrm1_1 92 164 IPR000504 GO:0003723
Mupr13139g00001 254 MobiDBLite consensus disorder prediction 14 28 - -
Mupr13139g00001 254 Gene3D - 79 235 IPR012677 -
Mupr13139g00001 254 MobiDBLite consensus disorder prediction 14 45 - -
Mupr13139g00001 254 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 252 - -
Mupr13139g00001 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 168 IPR000504 GO:0003723
Mupr13139g00001 254 Pfam C-terminal duplication domain of Friend of PRMT1 197 248 IPR025715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13139g00001 Mupr-Chr13139 4679 7846 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13139g00001 90 165 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 3.66e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13139g00001 K12881 - gmx:100775827 373.244