Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13100g00003 ATGGCAGAGATTTGTTGGTTCGTGAAATGCCCCATCAGTTTGGACTTGTTCGAAGATCCAGTAACTTTGTGCACAGGCCAAACCTATGACAGATCAAGCATAGAGAAATGGTTTTCCGCAGGAAATCTCACATGCCCTGTAACAATGCAGAAGCTTCATGATCCATCCATTGTTCCCAACCACACTCTTCGCCACTTGATCGATCAGTGGCTCCAATTGGGTCCCCAATTTGGTAACTCTGCCACTATTGATTACTTATCTTCACTCAAGCACACCCTTGAATCTCCCGAATTGGAAAACAAGCTCCAAGCACTTGAGAAAATTAGAGTTCTCTCCGATGAGTATTGCTCCTTCAGAAAATCTTGCTTCCACCAACTGAGTTTCTTGCCCCTACTCTTGGAACTAGTTTTTGGCACTCACCTCTCCAAATGTCACATGGAGTTCACGGAGCTAGCACTTTCTTGCATTCTAAAATTGTTGCCTCTTGTGAGCTTGGAGCCTCTAAATATGATCAAAGATGAGTCTAAGTTAGCAAATTTTGTGCTGTTATTTGAAAAGGGAACTAGCTCGGTTAAGACAAGTCTTTGTTATCTTATAGATTCAACATCAGCGCCACAAACTGAAGAGTTATGTCACATGCTTGGACACTCTCACAAGCTAGTGCATGAGATTGTTGTGCTTGTTCGCCAAGGTTGTGAGGCTTCCAAGGTTGCAATTAAGGCCATGTCAGCGTTATGTTCCTTGCAATCTAACAGAGAGAATTTGGTGAGAGCAGGAGCAATTGATGGGGTCATAACATACATTTCAGGCTGTGAAACAAGGCAGAAGAATTTGGCTCCACTGGCAATGGGAATAATAAAGAAACTTTTGGTTCTAGAGAGTGCTAAAGAGGCGCTGGTGAATCACCCAAATGGGGTTGAAACTTTGGTGAAGATGGTTTTCAGGGTGTGTAATCAAGAGTGTAGTGAGAGTGCTGTTGGGGTGCTTTCAATTGTTTGTCGTGATTTTGGGCGTGCAAGAGAGGAAGCAATTGGGGCTGGAGTTTTGACTCAGTTGCTGTTTCTTCTGCAGAGTCAGTGTGGCATCAAAACTAAAACAAAGGCAAGAATGCTGCTCAAGTTGCTAAGATCCAAGTGGATTGAGGAACCAAAGCAGTGTAGAATGTGTACCATACGAGTCCATTCTTCGATGATTCAATGTTTGGCCGAGATTGATGGAATTGATTTTGCAAGCTCCACCATGGTAAGAAAGGCAAAGAATTTGAAAATCTCATTGAAAAGTAAATAA 1287 0.4274 MAEICWFVKCPISLDLFEDPVTLCTGQTYDRSSIEKWFSAGNLTCPVTMQKLHDPSIVPNHTLRHLIDQWLQLGPQFGNSATIDYLSSLKHTLESPELENKLQALEKIRVLSDEYCSFRKSCFHQLSFLPLLLELVFGTHLSKCHMEFTELALSCILKLLPLVSLEPLNMIKDESKLANFVLLFEKGTSSVKTSLCYLIDSTSAPQTEELCHMLGHSHKLVHEIVVLVRQGCEASKVAIKAMSALCSLQSNRENLVRAGAIDGVITYISGCETRQKNLAPLAMGIIKKLLVLESAKEALVNHPNGVETLVKMVFRVCNQECSESAVGVLSIVCRDFGRAREEAIGAGVLTQLLFLLQSQCGIKTKTKARMLLKLLRSKWIEEPKQCRMCTIRVHSSMIQCLAEIDGIDFASSTMVRKAKNLKISLKSK 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13100g00003 428 FunFam RING-type E3 ubiquitin transferase 7 75 - -
Mupr13100g00003 428 SMART Ubox_2 7 70 IPR003613 GO:0004842|GO:0016567
Mupr13100g00003 428 Pfam U-box domain 7 72 IPR003613 GO:0004842|GO:0016567
Mupr13100g00003 428 SUPERFAMILY RING/U-box 4 72 - -
Mupr13100g00003 428 CDD RING-Ubox_PUB 9 52 IPR045210 -
Mupr13100g00003 428 PANTHER WDSAM1 PROTEIN 9 383 IPR045185 GO:0061630
Mupr13100g00003 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 74 IPR013083 -
Mupr13100g00003 428 SUPERFAMILY ARM repeat 233 378 IPR016024 -
Mupr13100g00003 428 Gene3D - 78 404 IPR011989 -
Mupr13100g00003 428 ProSiteProfiles U-box domain profile. 3 77 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13100g00003 Mupr-Chr13100 21488 23979 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13100g00003 3 379 U-box Gene Family AT3G19380 30.750 3.97e-40 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13100g00003 - - gmx:100815247 674.085