Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13093g00002 ATGGTCCTAACTCATAATAAGAGAAGACTTGAAGCAATTTTGGACATCTCAATGACTTCTGCTTTCAAGAAATACCCTGACTTCTTCAAAGTCTTCCTTCCGGAACAACACTCTGAAAGAATGCTTATTCCAAATGCTTTTGTGAAGTTGACACAGTTGCAAGGAAGGGTCCCTGAGGATGTGATCCTGAGAAATGGTGGTGGGAGAGTTTGGAGTGTAAAAACACGTAGTATTGGAGAGAAATTGTATTTTGATGAAGGGTGGAAGGTTTTCCAAGAAGAAAACTGCTTAGGAAAAGCAGATTTTATCGTTTTTAAGTATGATGGGACTAATGAGTTCAACATCATAATCCTTGAACTCTCAACACAGTGCGAAAAGACTGTTATAAAGATGGAGGAGGAGGGGAACGTAGAAGATGAAGCAGCAGCAGCAGCAGCAAAACAAGTTGAGAAGGAGACAGAGATAACAGAAGAGGAAGAACGTGAACAAGTTGATGACTGTGACGTAGAGGATGAGGAAGACAGCAGTGAGGATGAGGACTATGACGATGATGACGACGACAGCGATGAGTATATAGCCTTGGAAGAAGATATTGAAGGAGAATACAGTGCTGGTAACATGAATCCAAGTTTTCTTAGAGCTTACAAAAGGGAGATTTCTTCAAGTTCAACCCTCAAGATTGGAGATCCTCTTCATGACATTGAATTTGATCCAGAAGTGTATATTCAGCCGGAAAATCCATATTTTGAAGCAAAACTCTACAAAAATAGACGCAACGAATTGCATATTCCAGGAAATGTCATAAGCGACTTTTCACTTACTTTTCCAGAAAAGATTACCCTTATATGTTGCCAACACTGCCAACGCCGGGATATTCAAAGAAATGAATTACAGGAGTATCATCTGAAACACAACCACATCCGCAAAAAATATTTGGAAGTGACAGGACAAGTGTGTAGGTGGCAAGATGGTCGAATATGTATCAAGGGTTGGTTAAGCTTTTGTAGAAGGAACAAGATGAAAGAAAATGATGCATGCCTCTGTGAAATTATATCAGGGGAAGACCAAATAGTAAGATTATTTCGGGTGCAC 1092 0.3984 MVLTHNKRRLEAILDISMTSAFKKYPDFFKVFLPEQHSERMLIPNAFVKLTQLQGRVPEDVILRNGGGRVWSVKTRSIGEKLYFDEGWKVFQEENCLGKADFIVFKYDGTNEFNIIILELSTQCEKTVIKMEEEGNVEDEAAAAAAKQVEKETEITEEEEREQVDDCDVEDEEDSSEDEDYDDDDDDSDEYIALEEDIEGEYSAGNMNPSFLRAYKREISSSSTLKIGDPLHDIEFDPEVYIQPENPYFEAKLYKNRRNELHIPGNVISDFSLTFPEKITLICCQHCQRRDIQRNELQEYHLKHNHIRKKYLEVTGQVCRWQDGRICIKGWLSFCRRNKMKENDACLCEIISGEDQIVRLFRVH 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13093g00002 364 PANTHER B3 DOMAIN-CONTAINING 22 354 - -
Mupr13093g00002 364 Pfam B3 DNA binding domain 28 116 IPR003340 GO:0003677
Mupr13093g00002 364 CDD B3_DNA 26 118 IPR003340 GO:0003677
Mupr13093g00002 364 SUPERFAMILY DNA-binding pseudobarrel domain 24 119 IPR015300 -
Mupr13093g00002 364 SMART B3_2 249 364 IPR003340 GO:0003677
Mupr13093g00002 364 SMART B3_2 28 121 IPR003340 GO:0003677
Mupr13093g00002 364 ProSiteProfiles B3 DNA-binding domain profile. 26 121 IPR003340 GO:0003677
Mupr13093g00002 364 Gene3D - 237 364 IPR015300 -
Mupr13093g00002 364 SUPERFAMILY DNA-binding pseudobarrel domain 242 362 IPR015300 -
Mupr13093g00002 364 Gene3D - 19 124 IPR015300 -
Mupr13093g00002 364 MobiDBLite consensus disorder prediction 155 187 - -
Mupr13093g00002 364 MobiDBLite consensus disorder prediction 139 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13093g00002 Mupr-Chr13093 11626 13970 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13093g00002 26 364 B3 DNA Binding Superfamily AT3G06160 26.023 3.68e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mupr13093g00002 B3 4.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13093g00002 - - var:108340234 379.022