Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13083g00002 ATGTCCATGCATTTTGTAGATAATTATCATATGGCTATGGAGAAAGGACCCTTGTCAGACATTCGGATAAGGTCAAGGAAAGCTACGTTATCAGATTGCTCGCGTTTTCTACGTCCTGGAATTGACGTGTGTGTGTTATCAGCCCCTCAGCAATCTGATGATTCAGATGCAATTTGTATCGACCCTGTTTGGGCTGATGCTAAAATAAGTTCTGTACAAAGAAGACCCCATGACTCTGAGTGCTCGTGTCAGTTTTATGTCAACTTCTATGTTCATCAAGGTTCACTTGGTGCAGAGCTAAGAAGTCTTAGTAAGGAGATTAAAGTAGTTGGAATCAATCAAATATCTATCCTCCAAAGACTTGAACATATTCCTTGTGAAAATCAGCACTACCGGTGGGCTTCATCTGAGGACTGCTCTATAATATCACACACTAAATTGCTTCTGGGAAAAGTGTTATGTGATCTTTCATGGTTAGTTGTTGCTTCAGTTATAAGGAAGGTTTCATTCTGCATAAGATCTCTAGAAGACAGGCTAGTGTATCAAATTTTGGGAAGTGATGCTGTTAGCCCTTCATTGAACAATGAGTCTCGCATTAATGTTGTCAGTTTCAGAACAGACAGTGGCATGTTAGTACCCATTGTTTCTCAAATAGCTACACCTAAAACCAAGAGGATTGATCATGCACAGGAATCCCATGAAGATAAAGCATCGTCATCTTATGATGTTGAGGGCTTACGGCGTTCCAAGCGCCGGAATGTACAACCTGAGCGCTACCTTGGTTGCGACAATGTTTCTGCGATTGATGTTGGTTCTTTTAGAAACAGACCACCAGTTAAGATAGACACATGGAAAGATGATGATGATGATGATGATGAACTATATATGCCATTAGCATTCCTGTTTGGTTTGCGGCAGAAGTGTCTAGAAGAGGATACTGACAAGAATAAAAAAGTCAAGAAGGTGAATACCTGCCGCGAGCTTGTGGTGTACAGTAGAAGGGCTAAATCCCGGAAGGTAAAGTCAGGAGATGATGATCAGAATGAACATCAAAATCATCTTGCTATTATTCCTCTTCCTGATCAAGATGATCCGGTAGCCATTGAGCATTGTGATGTAAATGACAAGGTTACTAGAAGTTATGGTCATGAATCCTCTGAGATTCCTTCCAAATATTATCATCTAACTAGTGCCCCTAAGCCAAAGAGGAATGATATTAAACTATTAACTTTTGAGCCCCATAATCATCCTGCAAAGTCAGATGATGCAGAAAAGAATGATGATTTGTCATTGAGATATCATTATAGTTATGGTACCCCTAAGTTGCAGAGGAAGAGTTTATCTGGTCTGGATGATATGGTGGATCTTGGAAATAAATGGGAAGGGATAAATTCCAATAAAGGAGTTCAAGGGAAAAAACATCGTACAACATATTTAAGAAGTAGAGATTATGGAGAAGAAAAAAGATACAATTACAAAGACAGAACCTTAAATGCAGCTGCCTACAAGGAATTGATAAATTCTTACTTAAAGAATATCAATACAAAACCAATCGAAGAAGAACCGTCTATTGCTGACCAGTGGAAGGAAAGCAATACAACAAGCAGCGTAGGGCAAAAGAAGGAAACAGAGATACTCGATGGAGAGGATGCAGAAGAAGTATCTGAAATGGATATGTTGTGGAGAGAACTGGAAGTGTCATTGGCATCAAGTTATCTAGAAGACACAGAGGATTCAAATACTGCCGTTATCCCTGAGTCTCTGGAAAATCCGAACAAAGGTTGTCCACATGATTACAGACTGAATGAGGAAATTGGAATTTACTGCTATAGATGTGGCTTTGTGAGCACTGAGATCAAATATATTACACCACCCTTTATTCAAAATACAGTGTGGCACCAAGAGGAGAAGCAGAGTGCTGAAGAAGATTCAAGAACCAAGGCTGATGAAGATGAAGACTTCGATCTTTTCCCAACTCTTGCTTCTCCCAAGGAACCTGTGTGTGAAGAAAATGAAAACGTTTGGGCATTAATTCCCGAACTTAGAACAAAGTTGCATGCCCATCAAAAGAAAGCTTTTGAGTTTCTTTGGCAAAACATTGCAGGGACCATGGAACCAGGACATATGGAAGCAGTATCCAAAAGAAGAGGTGGCTGTGTGATATCTCATACTCCTGGAGCTGGAAAAACTTTTCTCATCATTGCTTTTCTTGTTAGCTACTTGAAGTTATTCCCAGGGAAAAGGCCTCTAGTCCTTGCTCCAAAAACAACACTCTATACTTGGTACAAAGAATTTATCAAGTGGGACATTCCTATACCAGTGTATCTGATTCATGGTCGTAGAACCTACAGGGTATTCAAGCAGAAATCAATGCTTGTTATTCCTGGAGTTCCCAAGCCAACTGATGATGTCAAACATGTTTTGGATTGTCTTGAGAAGATACAAAAATGGCATTCGCACCCAAGTGTTCTGATCATGGGTTATACTTCATTTTTAACATTGATGCGAGAGGATTCAAAGTTTGCACACAGAAAATACATGGCTAAAGTATTGAGGGAAAGCCCTGGGATCATGGTACTGGATGAAGGGCACAATCCTAGAAGCACTAAATCAAGGTTGAGAAAAGTTTTGATGAAAGTACAGACAGAATTGAGAATACTGCTTTCTGGTACATTGTTTCAGAACAATTTCTGCGAATACTTTAACACTTTGTGCTTGGCAAGACCAAAGTTTATTCATGAAGTACTGAAAGCACTAGACTCAAAGTACAGGAGGAAAGGGAAAGTGGCAAAAAAAGCGCGTCATTTATTAGAGTCGCGGGCTAGGAAATTCTTCTTAGACAAAATTGCTAAGAAAATTGACTCGGATAATGGTAGGGAGAGGAGGCAGGGTCTAAAGATGTTGAGAAATGTGACAAATGGTTTCATAGATGTTTATGAAGGTGGGAGTTCTGATGGTCTACCTGGTTTGCAAATTTATACATTGCTAATGAATTCAACTGATACACAGCATGAGATTTTGCACAAACTGCACCAGAAAATGGCCAAGTGCAATGGATACCCTTTGGAGTTAGAGCTTTTGATAACTCTTGGTTCAATACATCCTTGGCTGGTCAAAACAGCTGTATGTGCTGAGAAGTTTTTCACTCGGGAGCAATTGATGGAGCTAGAGAAGTGCAAGTTTGATCTAAAAATAGGGTCCAAAGTAAGATTTGTTTTGAGCCTTATCTACCGCGTTGTCAAGAAGGAGAAGGTCCTTATATTTTGTCACAACATTGCACCTGTGAAATTATTTGTGGAATATTTTGAGAAGTACTTTGGATGGCAAAAAGGTAGGGAAGTGTTGGTACTAACTGGGGAACTAGAGCTCTTTGAAAGGGGGAGAGTAATGGACAAGTTTGAGGAGCCTGGTGGAGTATCCAAGATACTCCTTGCTTCAATTACAGCTTGTGCTGAAGGCATTAGTTTGACTGCTGCTTCTAGAGTGATCATGTTGGACTCTGAGTGGAACCCTTCAAAAACAAAGCAGGCTATTGCTCGTGCCTTTCGTCCTGGTCAACAGAAGGTTGTTTATGTGTATCAGCTATTGGTGACAGGTTCATTGGAGGAAGATAAGTACAGAAGAACCACTTGGAAAGAGTGGGTGTCAAGCATGATTTTCAGTGAGGCCTTTGTGGAGGACCCTTCTCGGTGGCAAGCTGAGAAGATTGAGGATGATATACTCAGGGAAATGGTTGAGGAGGACCGGTCTAAATCATTCCACATGATCATGAAGAATGAAAAGGCTTCTACAAACAAA 3798 0.4026 MSMHFVDNYHMAMEKGPLSDIRIRSRKATLSDCSRFLRPGIDVCVLSAPQQSDDSDAICIDPVWADAKISSVQRRPHDSECSCQFYVNFYVHQGSLGAELRSLSKEIKVVGINQISILQRLEHIPCENQHYRWASSEDCSIISHTKLLLGKVLCDLSWLVVASVIRKVSFCIRSLEDRLVYQILGSDAVSPSLNNESRINVVSFRTDSGMLVPIVSQIATPKTKRIDHAQESHEDKASSSYDVEGLRRSKRRNVQPERYLGCDNVSAIDVGSFRNRPPVKIDTWKDDDDDDDELYMPLAFLFGLRQKCLEEDTDKNKKVKKVNTCRELVVYSRRAKSRKVKSGDDDQNEHQNHLAIIPLPDQDDPVAIEHCDVNDKVTRSYGHESSEIPSKYYHLTSAPKPKRNDIKLLTFEPHNHPAKSDDAEKNDDLSLRYHYSYGTPKLQRKSLSGLDDMVDLGNKWEGINSNKGVQGKKHRTTYLRSRDYGEEKRYNYKDRTLNAAAYKELINSYLKNINTKPIEEEPSIADQWKESNTTSSVGQKKETEILDGEDAEEVSEMDMLWRELEVSLASSYLEDTEDSNTAVIPESLENPNKGCPHDYRLNEEIGIYCYRCGFVSTEIKYITPPFIQNTVWHQEEKQSAEEDSRTKADEDEDFDLFPTLASPKEPVCEENENVWALIPELRTKLHAHQKKAFEFLWQNIAGTMEPGHMEAVSKRRGGCVISHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWDIPIPVYLIHGRRTYRVFKQKSMLVIPGVPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKYMAKVLRESPGIMVLDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFIHEVLKALDSKYRRKGKVAKKARHLLESRARKFFLDKIAKKIDSDNGRERRQGLKMLRNVTNGFIDVYEGGSSDGLPGLQIYTLLMNSTDTQHEILHKLHQKMAKCNGYPLELELLITLGSIHPWLVKTAVCAEKFFTREQLMELEKCKFDLKIGSKVRFVLSLIYRVVKKEKVLIFCHNIAPVKLFVEYFEKYFGWQKGREVLVLTGELELFERGRVMDKFEEPGGVSKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVEDPSRWQAEKIEDDILREMVEEDRSKSFHMIMKNEKASTNK 1266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13083g00002 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 657 924 IPR027417 -
Mupr13083g00002 1266 MobiDBLite consensus disorder prediction 223 247 - -
Mupr13083g00002 1266 SMART helicmild6 1096 1185 IPR001650 -
Mupr13083g00002 1266 CDD SF2_C_SNF 1060 1196 - -
Mupr13083g00002 1266 SMART ultradead3 681 915 IPR014001 -
Mupr13083g00002 1266 MobiDBLite consensus disorder prediction 224 247 - -
Mupr13083g00002 1266 Gene3D - 662 952 IPR038718 -
Mupr13083g00002 1266 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 710 910 IPR014001 -
Mupr13083g00002 1266 Gene3D - 1040 1259 IPR027417 -
Mupr13083g00002 1266 CDD DEXHc_ATRX-like 685 915 - -
Mupr13083g00002 1266 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 13 1264 IPR044567 GO:0080188
Mupr13083g00002 1266 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1072 1232 IPR001650 -
Mupr13083g00002 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 986 1248 IPR027417 -
Mupr13083g00002 1266 Pfam SNF2-related domain 684 953 IPR000330 GO:0005524|GO:0140658
Mupr13083g00002 1266 Pfam Helicase conserved C-terminal domain 1068 1184 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13083g00002 Mupr-Chr13083 17389 22590 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13083g00002 1064 1203 RAD5 or RAD16-like Gene Family AT5G43530 33.566 4.11e-11 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mupr13083g00002 SNF2_N 6.5e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13083g00002 K10875 - gmx:100811703 2210.65