Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13047g00001 ATGAAGATTGGTAATTTCCAAGTGGAACATAAAGAAGAACAAAGAATGAGCAGAAGACCACCACCTGATCCTGTGGCAGTGCTACGAGGCCATCGAGCTTCAGTCACAGACATTTCTTTCCATCCCTTTAAGCCGATATTATTCTCCGGTTCTTCTGATGGTGAAGTGCGAATTTGGGATACCCTTCAGCATCGGACGGTATCATCTGCATGGTTACATAGTGCCGCACATGGTATTGTTGCTGTTGCCAGTAGTTCTTCACTCGGAACCAATAAATTTATCAGCCAGGGTAGGGATGGAACCGTAAAAGTTTGGGAGTTTGATGATGCTGGTTTGTCCAGGTACACATCTGTATTTGCTTCAATTTTTACAAACGTCTCATCCTTTTTTAGTTTTAGAGGGATAGCTTGTGTTTTTGTGATACAAGCTACATGGATGTTCTTATTATCATCTCACTTTCTGTTGACCTGCACCCCCAAACCCAGGATTCCATCACTTACAATCAAGACAAACACTTACCACTTTTGCAAGTTTTCCACAGTGAAGAATCATTTCGATTGGTCGAAAGAAGGGAAAAAATCAGAAGATTGCTATAGAACAGAGCTAGGAGGAATGTCTAATAGAGAAATTCTGGAGGTTAAAAGAGAAGAGGCTTTTACCAATCAAAGTTGTGCTGAAAGTTTTGAAGATAATGTGTATAATGAAGGGCTACAATATGTGGCTTTGTCAGGGGAAAACTCTTCTGAGATTGAAATTTGGGATCTCAAGTCAGCTGAAAAATTTGTACGACTCCCTTCAAGCAATCCTAGTAACTCTTCAAGTGGTTTCAACAAAGGGATGTGCATGGCACTTCAATTATTTTTACCATCTGAATCACAAGGATTTTTAAATGTCTTGGCTGGGTATAGTCTTGTTCCTTTTCCTCCCTCTCTCTCTCTCTCTCTCTCACAAGTATATGAGGATGGTTCCATGCTTTGGTGGGATGTACGGAATCCCGGAGTTCCAGTAACTTCTGTAAAATTCCATTCTGAGCCGGTTCTGAGCATCTGTATTGACGGATCTTGCAAAGGGGGTATCTCAGGAGCTGCAGATGACAAAATTGTAATGTACAGCTTGGATCATTCTTCGGGTACATGTGTGATCAAGAAAGAAATCAGTTTGGAGCGACCAGGCATCTCAGGCACCTCAATTCGACCTGATGGAAAAATTGTTGCAACTGCTGGCTGGGACCACAGGGTGAGGATATATGATTACCGCAAAGGAAATGCTTTAGCTATTTTAAAGTATCACCATGGCACGTGCAATGCTGTAACTTATTCGTCTGATTGTAAACTCATGGCCTCTGCTTCGGAAGACACAACCGTGGGGCTATGGGAATTGTATCCTCCTCGAAGCTGCAAAACAGTAATACCCCAGTAG 1419 0.4214 MKIGNFQVEHKEEQRMSRRPPPDPVAVLRGHRASVTDISFHPFKPILFSGSSDGEVRIWDTLQHRTVSSAWLHSAAHGIVAVASSSSLGTNKFISQGRDGTVKVWEFDDAGLSRYTSVFASIFTNVSSFFSFRGIACVFVIQATWMFLLSSHFLLTCTPKPRIPSLTIKTNTYHFCKFSTVKNHFDWSKEGKKSEDCYRTELGGMSNREILEVKREEAFTNQSCAESFEDNVYNEGLQYVALSGENSSEIEIWDLKSAEKFVRLPSSNPSNSSSGFNKGMCMALQLFLPSESQGFLNVLAGYSLVPFPPSLSLSLSQVYEDGSMLWWDVRNPGVPVTSVKFHSEPVLSICIDGSCKGGISGAADDKIVMYSLDHSSGTCVIKKEISLERPGISGTSIRPDGKIVATAGWDHRVRIYDYRKGNALAILKYHHGTCNAVTYSSDCKLMASASEDTTVGLWELYPPRSCKTVIPQ 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13047g00001 472 Gene3D - 20 285 IPR015943 GO:0005515
Mupr13047g00001 472 Pfam WD domain, G-beta repeat 24 60 IPR001680 GO:0005515
Mupr13047g00001 472 Pfam WD domain, G-beta repeat 396 417 IPR001680 GO:0005515
Mupr13047g00001 472 Pfam WD domain, G-beta repeat 424 458 IPR001680 GO:0005515
Mupr13047g00001 472 SMART WD40_4 332 371 IPR001680 GO:0005515
Mupr13047g00001 472 SMART WD40_4 21 60 IPR001680 GO:0005515
Mupr13047g00001 472 SMART WD40_4 63 106 IPR001680 GO:0005515
Mupr13047g00001 472 SMART WD40_4 420 459 IPR001680 GO:0005515
Mupr13047g00001 472 SMART WD40_4 378 417 IPR001680 GO:0005515
Mupr13047g00001 472 Gene3D - 305 471 IPR015943 GO:0005515
Mupr13047g00001 472 ProSiteProfiles Trp-Asp (WD) repeats profile. 385 426 IPR001680 GO:0005515
Mupr13047g00001 472 PRINTS G protein beta WD-40 repeat signature 93 107 IPR020472 -
Mupr13047g00001 472 PRINTS G protein beta WD-40 repeat signature 47 61 IPR020472 -
Mupr13047g00001 472 PRINTS G protein beta WD-40 repeat signature 446 460 IPR020472 -
Mupr13047g00001 472 PANTHER TRANSDUCIN BETA-LIKE 3 19 461 - -
Mupr13047g00001 472 ProSitePatterns Trp-Asp (WD) repeats signature. 446 460 IPR019775 -
Mupr13047g00001 472 MobiDBLite consensus disorder prediction 1 19 - -
Mupr13047g00001 472 MobiDBLite consensus disorder prediction 1 24 - -
Mupr13047g00001 472 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 427 460 - -
Mupr13047g00001 472 ProSiteProfiles Trp-Asp (WD) repeats profile. 427 460 IPR001680 GO:0005515
Mupr13047g00001 472 ProSiteProfiles Trp-Asp (WD) repeats profile. 28 69 IPR001680 GO:0005515
Mupr13047g00001 472 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 28 60 - -
Mupr13047g00001 472 SUPERFAMILY WD40 repeat-like 10 459 IPR036322 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13047g00001 279 470 U-box Gene Family AT2G33340 25.500 5.13e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13047g00001 K24770 - gmx:100800482 679.478