Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13042g00001 ATGAGTGGTGGTGGGTGCCCCTGTCCCAGGGGTAGTAGTGAGTGTTCCGCGGAGGATATGAATGGTGACACTGTCGGAATTTTGAATCAAAATATTGGGAAGCCTCCAAGGGACCATTCTGCTCATCGCCATTACACCAGCTCTTCTTGGTCTGCTGAATCGGCATCAAATATTAATATGATTGGACTTAAATCAAGCACAGAAGAAAAATCAGATTTTTTACTTGTATTGCGATCTGGATCCTGTTCTGAGAAAGGACCAAAGCAGTACATGGAGGATGAATTCATATGTATTGATATTCTTGATGAATGTGTCGGTCAAAGAACAGACATTCCTTCTCCTGCAGCATTTTATGGGGTATTTGATGGACATGGTGGTGTTGATGCAGCATCATTTACCAGAAAGAACATCCTTAAGTTTATAGTTGAAGATGCGCAATTCCCATCCAGCATTACAAAAGCAGTTAAGAGTGCATTCGTGAAAGCTGATCTAGCGTTTAGAGATACCAGTGCTCTTGATATTTCGTCAGGCACCACCGCTCTAATAGCCATTATGTTGGGAAGTTCCATGCTGATTGCAAATGCAGGGGATTCTCGAGCTGTATTGGGAAAACGGGGCAGAGCCATTGAACTTTCCAAAGACCATAAACCAAATTGCACTTCTGAGAGGCTAAGAATTGAGAAGTTAGGTGGTGTGATATATGATGGATACTTGAATGGGCAACTATCAGTGGCTCGTGCTCTTGGAGATTGGCACATCAAAGGTTCCAAAGGTTCTAAGAGTCCCTTGAGCGCAGAGCCAGAGGTGGAGGAGATTGTGATGACAGAAGAAGATGAGTTTTTGATAATGGGTTGTGATGGATTATGGGATGTGATGAGCAGCCAGTGTGCTGTTACAATGGTGAGGAGAGAACTCATGCAGCATAATGATCCCACCACATGTGCAAAGGTACTTGTTGCCGAGGCCCTCCAACGCAACACGTGTGACAACCTAACTGTTCTGGTTGTGTGCTTCTCTAATGATCCACCTCCTAAGATTGAAATTCCTAGATCATATAGGAGGAGGAGTATTTCTGCTGAAGGCCTTGATCTTCTCAAAGGTGTCTTGAATGAGATGCGTAAAGTGTGGAAAGCATTAGCATATCCTACATCCTCCTCAACCCCTTTTCTAAGGTGTTTCCAATTCCAAACGCATTCTTCTTCTGCACCAAGCGAAGAACATGTCAAGCAGATGATACTGGACCAGAAATCTTCTTCCCAAGCATTGGAATACTTCAGATGGGCATCCACCATCCCCAACTTCGTCCATTCTCAATCCACATACCGCACATTGATCCACAAACTTTGCACTTTCCGCCGCTTCGACACTGTCAAGCAACTGCTCGACGAAATGCCTGACTCACTCGGCGTGCCCCCTGGTGACGACATCTTCGTCACCATCATCCGCGGCCTCGGCCGGGCCCGGATGACTAGAACCGTCGTCAAAGTACTTGACTTGGCATACAAGTTTCATGACATCCCCTCCCTCAAGATTTTCAACTCAATTTTGGATGTCCTTGTGAAGGAGGACATTGACATGGCCAGGGAGTTTTATAGGAAGAGCATGATGGCAAGTGGGGTTGAGGGGGATGACTACACTTTTGGCATTTTGATGAAAGGGCTGTGCCTTACTAATAGGATAGGTGAAGGTTTTAAGCTCTTGCAGCTTATTAAGTCTAGAGGGATTAAACCAAACACTGTGGTTTACAACACTTTGCTTCATGCACTTTGTAGGAATGGGAAGGTTGGGAGGGCTAGGAGCTTGATGAGTGAGATGGAGGAGCCTAATGATGTTACCTTTAATATTTTGATATCTGGGTATTGTAAGGAAGGGAATTCAGTTCAGGCTCTTGTCCTGCTGGAGAAGAGTTTTAGCATGGGGTTTGTGCCTGATGTTGTTAGTGTCACTAAGGTGTTGGAGATTCTGTGCAATGCTGGCCGCGCAACGGAGGGAGCTGAGGTTTTAGAGAGAGTTGAGAGCATGGGAGGTTTGCTAGATGTTGTGGCTTACAACACCTTGATAAAGGGGTTTTGTGGAGTGGGGAAGGTGAAGGTTGGGCTTCATTTTTTGAAGCAGATGGAGAGGAAAGGCTGTCTTCCAAATGTAGACACCTATAATGTACTGATATCTGGTTTTTGTCAGTCCGGGATGTTGGATTTGGCCCTTGATCTTTTTAATGATATGAAAACGGATGGGATCAAATGGAACTTTGTTACGTTTGATACAGTAATTAGAGGCTTGTGTTCAGAAGGAAGGACCGAAGATGGTTTTTCTATGTTGGAGCTGATGGAGGAAAGCAAAGAAGGCTCTAGAGGGTACATTAGTCCTTATAATAGCATCATATATGGCCTGTTTAAGCAAAGTCGTTATGATGAAGCAGCTGAGTTTCTAACAAAGATGGGAAACTTGTTCCCTAGGGCTGTTGACAGAAGCGTGATGATTCTAGAGCACTGCAAGAAGGGGGCTATTGAGGATGCTAAGAGGGCATACGATCAGATGATTGATGAAGGTGGAATTCCAAGTATTCTAGTTTATAACAGCCTTGTACATGGATTTTCCCAACAAGGCAGTGTTCGTGAGGCCGTTGAGCTGATGAATGAAATGATTGCTAATAACTGTTTTCCCGTTCCATCTACATTCAATGCTGTCATTACTGGGTTTTGCAGACAAGGAAAAGTTGAAAGTGCCTTGAAGTTGGTGGAAGACATCACTGCAAGAGGTTGTGTACCCAATACAGAAACTTACACTCCTTTGATTGATGTCCTATGTGGGAAGGGGGACCTTCAGAAAGCCATGGAGGTCTTTATACAAATGGTAGACAAGGGCATCCTTCCGGACCTTCTTATTTGGAATTCACTACTACTCAGTTTGAGTCAAGAAAGACATTTCAGTAAGAATATGCTCTACATAGATGACATTCTC 2961 0.4424 MSGGGCPCPRGSSECSAEDMNGDTVGILNQNIGKPPRDHSAHRHYTSSSWSAESASNINMIGLKSSTEEKSDFLLVLRSGSCSEKGPKQYMEDEFICIDILDECVGQRTDIPSPAAFYGVFDGHGGVDAASFTRKNILKFIVEDAQFPSSITKAVKSAFVKADLAFRDTSALDISSGTTALIAIMLGSSMLIANAGDSRAVLGKRGRAIELSKDHKPNCTSERLRIEKLGGVIYDGYLNGQLSVARALGDWHIKGSKGSKSPLSAEPEVEEIVMTEEDEFLIMGCDGLWDVMSSQCAVTMVRRELMQHNDPTTCAKVLVAEALQRNTCDNLTVLVVCFSNDPPPKIEIPRSYRRRSISAEGLDLLKGVLNEMRKVWKALAYPTSSSTPFLRCFQFQTHSSSAPSEEHVKQMILDQKSSSQALEYFRWASTIPNFVHSQSTYRTLIHKLCTFRRFDTVKQLLDEMPDSLGVPPGDDIFVTIIRGLGRARMTRTVVKVLDLAYKFHDIPSLKIFNSILDVLVKEDIDMAREFYRKSMMASGVEGDDYTFGILMKGLCLTNRIGEGFKLLQLIKSRGIKPNTVVYNTLLHALCRNGKVGRARSLMSEMEEPNDVTFNILISGYCKEGNSVQALVLLEKSFSMGFVPDVVSVTKVLEILCNAGRATEGAEVLERVESMGGLLDVVAYNTLIKGFCGVGKVKVGLHFLKQMERKGCLPNVDTYNVLISGFCQSGMLDLALDLFNDMKTDGIKWNFVTFDTVIRGLCSEGRTEDGFSMLELMEESKEGSRGYISPYNSIIYGLFKQSRYDEAAEFLTKMGNLFPRAVDRSVMILEHCKKGAIEDAKRAYDQMIDEGGIPSILVYNSLVHGFSQQGSVREAVELMNEMIANNCFPVPSTFNAVITGFCRQGKVESALKLVEDITARGCVPNTETYTPLIDVLCGKGDLQKAMEVFIQMVDKGILPDLLIWNSLLLSLSQERHFSKNMLYIDDIL 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13042g00001 987 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 679 713 IPR002885 -
Mupr13042g00001 987 MobiDBLite consensus disorder prediction 1 20 - -
Mupr13042g00001 987 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
Mupr13042g00001 987 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 578 608 IPR002885 -
Mupr13042g00001 987 MobiDBLite consensus disorder prediction 26 48 - -
Mupr13042g00001 987 CDD PP2Cc 78 338 IPR001932 -
Mupr13042g00001 987 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 609 643 IPR002885 -
Mupr13042g00001 987 Pfam PPR repeat 790 813 IPR002885 -
Mupr13042g00001 987 Pfam PPR repeat 825 850 IPR002885 -
Mupr13042g00001 987 Pfam PPR repeat 439 466 IPR002885 -
Mupr13042g00001 987 Pfam PPR repeat 857 886 IPR002885 -
Mupr13042g00001 987 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 749 779 IPR002885 -
Mupr13042g00001 987 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 854 888 IPR002885 -
Mupr13042g00001 987 Gene3D Tetratricopeptide repeat domain 375 523 IPR011990 GO:0005515
Mupr13042g00001 987 SUPERFAMILY PP2C-like 72 340 IPR036457 -
Mupr13042g00001 987 ProSitePatterns PPM-type phosphatase domain signature. 117 125 IPR000222 GO:0043169
Mupr13042g00001 987 Gene3D Tetratricopeptide repeat domain 524 673 IPR011990 GO:0005515
Mupr13042g00001 987 Gene3D Tetratricopeptide repeat domain 819 986 IPR011990 GO:0005515
Mupr13042g00001 987 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 889 923 IPR002885 -
Mupr13042g00001 987 SMART PP2C_SIG_2 100 338 IPR001932 -
Mupr13042g00001 987 Pfam PPR repeat family 892 936 IPR002885 -
Mupr13042g00001 987 Pfam PPR repeat family 713 762 IPR002885 -
Mupr13042g00001 987 Gene3D - 62 342 IPR036457 -
Mupr13042g00001 987 Pfam PPR repeat 675 707 IPR002885 -
Mupr13042g00001 987 Pfam PPR repeat 607 635 IPR002885 -
Mupr13042g00001 987 Pfam PPR repeat 573 606 IPR002885 -
Mupr13042g00001 987 ProSiteProfiles PPM-type phosphatase domain profile. 78 338 IPR001932 -
Mupr13042g00001 987 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 543 577 IPR002885 -
Mupr13042g00001 987 Pfam Protein phosphatase 2C 79 330 IPR001932 -
Mupr13042g00001 987 NCBIfam pentatricopeptide repeat 611 645 IPR002885 -
Mupr13042g00001 987 NCBIfam pentatricopeptide repeat 545 579 IPR002885 -
Mupr13042g00001 987 NCBIfam pentatricopeptide repeat 580 607 IPR002885 -
Mupr13042g00001 987 NCBIfam pentatricopeptide repeat 857 888 IPR002885 -
Mupr13042g00001 987 NCBIfam pentatricopeptide repeat 892 925 IPR002885 -
Mupr13042g00001 987 NCBIfam pentatricopeptide repeat 927 959 IPR002885 -
Mupr13042g00001 987 NCBIfam pentatricopeptide repeat 717 749 IPR002885 -
Mupr13042g00001 987 NCBIfam pentatricopeptide repeat 751 780 IPR002885 -
Mupr13042g00001 987 NCBIfam pentatricopeptide repeat 681 715 IPR002885 -
Mupr13042g00001 987 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 419 776 - -
Mupr13042g00001 987 FunFam Probable protein phosphatase 2C 22 63 341 - -
Mupr13042g00001 987 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 714 748 IPR002885 -
Mupr13042g00001 987 SMART PP2C_4 68 336 IPR001932 -
Mupr13042g00001 987 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 924 958 IPR002885 -
Mupr13042g00001 987 Gene3D Tetratricopeptide repeat domain 674 743 IPR011990 GO:0005515
Mupr13042g00001 987 Gene3D Tetratricopeptide repeat domain 744 818 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13042g00001 Mupr-Chr13042 5049 10050 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13042g00001 61 372 PP2C-type Phosphatase Gene Family AT3G51470 75.962 4.40e-166 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13042g00001 - - gmx:100786950 1106.28