Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13038g00003 ATGGCCGAAGTTGAAATCCCTCAATATTTTCTTTGTCCCATTTCGTTTCAGATCATGGAGGATCCTGTGACAACCTTGACAGGCATAACATACGATAGAGAAAGCATAGAGCAGTGGTTGCTGAAAGCCAGAGATTGTGTGTGTCCTGTTACAAAACAAGCGTTGCCAAGAAGCTCTCAATACTTAACCCCTAACCACACCCTTCGGAGGCTAATCCAAGCTTGGCGTTCAGCAAACACAGCCAATGGTGTTGATCAAATTCCAACCCCGAAAACCCCTTTAAGTACGAGCCATGTTCAGAAGCTTGTGAAGGATCTTGAGGTTCTTAATGCTTATCAAACATCGTTGGAGAAGTTGCTAGTCTTGGCCACACAAGAGAGGAACAGAACTTGCATGGCTGAAGCTGGTGTAGCCAAGGGTGTGGTCAAAGTGATTAAAAAGAATTTCAAAGAAGGAAACTCAAACATCACTTGCATAGAAGAGGCTTTGAGAATTGTTCATCTTCTTTGGAACAATGATCACAACAACAGCATGAGAACTCTAGTTGGGGAGAACTTGGACTTCATCAACTCTTTGACTTGGATTTTGCAACTTCATTTGGACAACAACATGAAGATGGTAAACGAAGCAATGTTCCTTTTGAAGTTGACAATCGAAGTTGCTGATCCAACCCTCCTAGGCTCTTTAAGCCTTGAATTCTTCAAGGTAATGGTAAGAGTATTAAAAAAGAGAGCACTCCCTAAACAAGCCATTAAATCATCGTTGCACGTGCTCATAGAAACTAGCTCTTTGAGTAGAAACAGAACGAAGATTGTTGAAGCAGGTGCAGTAACCGAACTCATAGAGCTTGAGCTTGAAAAACCAGAGAAGAACATGACAGAGCTCATACTCAACCTCTTGGCACACCTGTGTTCTTGTGCTGAAGGAAGAGAACAGTTTCTGAGACACGCTGCAGGCATTGCGGTGGTTTCAAAGAGGCTTTTGAGGGTCTCTGCTGCCACTGATGAGAGAGCGATTCATGTGTTTTCGGTGATTGCCAAGTCTTCGGCATCGAATGAGGTTGTTCTAGAGATGTTAAGGGTTGGCGCCGTGTCAAAGCTTTGCATGGTCATGCAAGCGGATTGTGCTTCTTATTTGAAAGAGAGAACAAGAGACATCCTTAGGTTGCACTCCAAAGTTTGGAACAATTCTCCTTGCATACAAGTGTATTTGTTAACTAGGCACCAACGTTGA 1233 0.4323 MAEVEIPQYFLCPISFQIMEDPVTTLTGITYDRESIEQWLLKARDCVCPVTKQALPRSSQYLTPNHTLRRLIQAWRSANTANGVDQIPTPKTPLSTSHVQKLVKDLEVLNAYQTSLEKLLVLATQERNRTCMAEAGVAKGVVKVIKKNFKEGNSNITCIEEALRIVHLLWNNDHNNSMRTLVGENLDFINSLTWILQLHLDNNMKMVNEAMFLLKLTIEVADPTLLGSLSLEFFKVMVRVLKKRALPKQAIKSSLHVLIETSSLSRNRTKIVEAGAVTELIELELEKPEKNMTELILNLLAHLCSCAEGREQFLRHAAGIAVVSKRLLRVSAATDERAIHVFSVIAKSSASNEVVLEMLRVGAVSKLCMVMQADCASYLKERTRDILRLHSKVWNNSPCIQVYLLTRHQR 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13038g00003 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 83 IPR013083 -
Mupr13038g00003 410 Gene3D - 94 392 IPR011989 -
Mupr13038g00003 410 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Mupr13038g00003 410 SUPERFAMILY RING/U-box 3 82 - -
Mupr13038g00003 410 PANTHER WDSAM1 PROTEIN 3 401 IPR045185 GO:0061630
Mupr13038g00003 410 Pfam U-box domain 6 79 IPR003613 GO:0004842|GO:0016567
Mupr13038g00003 410 CDD RING-Ubox_PUB 7 58 IPR045210 -
Mupr13038g00003 410 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
Mupr13038g00003 410 SUPERFAMILY ARM repeat 249 374 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13038g00003 Mupr-Chr13038 42254 43486 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13038g00003 3 407 U-box Gene Family AT3G11840 41.611 2.63e-100 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13038g00003 - - gmx:100787426 635.565