Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13024g00002 ATGGCTTCCGTAGAAGAAAAGATTAAAACTGGAGGAGGAATGGTTGTTGGGGGTCAAACTCTAGCTGCTGAGATGAAACTCTTGAAAGAAATGCAGGAACATTCTGGGGTGAGAAAGACTTTGAATTCGGAGTTATGGCATGCTTGTGCAGGCCCTCTTGTGTCATTGCCTCAGGTTGGGAGCCTCGTGTTTTACTTCCCTCAGGGACATAGTGAGCAGGTGGCAGCTTCTACTAGAAGAACAGCAACCTCGCAGATTCCAAACTACCCTAATCTTCCATCTCAGTTGCTGTGTCAAGTTCAAAATGTCACACTTCATGCAGACAAGGAGACAGATGAAATCTATGCTCAAATGACTCTCCAGACACTGAATTCTGAAAAAGAAGTCTTTCCCATATCTGATTTTGGGCTAAAGCACAGTAAACATCCCAGTGAATTCTTCTGCAAAACTTTGACTGCTAGTGACACGAGCACGCACGGTGGCTTTTCGGTTCCACGCAGGGCAGCAGAGAAGCTCTTTCCTCCATTGGATTACACAATTCAACCCCCAACTCAAGAACTTGTTGTTCGAGATTTGCATGACAATACCTGGACATTTAGGCATATATACCGGGGTCAACCAAAGAGACACCTTCTCACAACAGGATGGAGTTTGTTCGTAGGCTCAAAAAGGCTTAGAGCTGTTCATACTGAGTATCGTTGCATAACTTTCTTCATACTGAAAATGATGTCAATTGCTACAAGGGATGAGAAATCGCAATTGCGAGTTGGCGTCAGGCGTGTTAATCGTCAACAGACAACACTGCCATCATCAGTACTTTCTGCTGATAGCATGCACATTGGGGTGCTTGCTGCTGCAGCTCATGCTGCTTCCAATCGAAGTCCATTCACTATTTTCTACAATCCAAGGGCATGCCCTTCAGAATTTGTTGTTCCACTGGCTAAATACAGAAAAGCTGTATTTGGGACTCAAGTCTCAGTTGGCATGAGATTTGGCATGATGTTTGAGACAGAAGAATCGGGTAAGCGCAGATATATGGGTACAATAGTTGGTATCAGTGATGTGGATCCTTTGAGGTGGCCTGGTTCTAAATGGCGAAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTGGTGATAAGCAGAATAGGGTTAGTGTATGGGAGATTGAGACTCCTGAGAGCCTTTTTATCTTCCCTTCTTTGACTTCAAGTCTAAAACGGCCGTTACAATCTGGACTTTTGGAAAATGAGTGGGGGACTTTGTTAAGAAGACCTTTTGTAAGAGTTCCAGAAAATGGAACTATGGATCTCTCAAACTCAATGCCAAATCTCTACTCAGAACACCTGATGAAAATGCTTTTTAAACCCCAGCTTATGAACACCAATGGAGCATTTTTATCCACCATGCAACAAGAATCTGCCGCTACAAGAGCCCCCTTGCAAGATAACCTAAAAGCTCATCTTGCAAGTGCAGAGAACATGCTACTGAAAAATCTACATTGTCAATCTATCCCTGACCAACCTAATTCCTTAAACATGCAATCACTTTTGAAAAGTGATCAACCTGACAAATTTCATCCTCTTGCCAAAGTTGACAATCATCACCCTTCTGGAGTAGTTACTGACAAGTTAAAATTAGAATCCGAGGTATTACCTGATCATATTATTGACTACCCTTCCATGGAAGGGTGTAACATTGAAAAGATGGCTGCAAATTCTGTTAACCAGCCAGGACTACCAAACCAATTGACATTCCATAATCAAAACCAGAGTCCCTTACTAAATCAATATAGTGCATGGCCTATGCAACCACAGCTAGAGTCATCCGTGCCGCATCCTCAAATGATTGACATGGCTCAAGCTGATTCTGCTATGGTAAATGGCCTGCTTCCTCAGCTAGACATTGATGAATGGATGGCGTATGCTTCTTCTCAACCTTTTGCTGGGCAGAACAGACCAACTGGACCTTTATCAGACTTGCAAGAACATACCTCACTTCAACCTCAAGTAGTGAATCCCCCTTTGCCTTCAATGAACCATGAAGTGTGGGATCATTACGTCAAGAACTTGAAGTTCTTATCTCAAGCAGATCAGCTAACATCCATCTGTCAGCCAGGGCTGTATAATGGCATTTCTAGCTCGAACAGTTTAAGGGATCTTTCAGCTGAGAGCAACAACCAAAGTGAGATTTGTGTCAATGTTGATGTTAGCAACAGTGTAGGCACCACCATGGTTGATCCTTCTACTTCTAGCACCATTTTGGATGAGTTTTGCACAATGAAGGACAGAGAATTTCAGACCCCACAAGATTGCATGGTGGGCAACTTGAGTTCAAGCCAGGATGTCCAGTCTCAGATAACCTCGGCCAGTCTAGCCGAGTCACATGCCTTTTCTCTGAGAGACAATTCAGGTGGCACTTCTTCAAGCCATGTTGATTTTGATGAAAGCAGCTTTCTGCAGAATAATTCGTGGCAGCAAGTACCTGCACCCATCCGAACCTACACAAAGGTGCAAAAGGCAGGTTCCGTAGGAAGATCAATTGATGTCACTACTTTCAAGAACTATGAGGAGCTGATCCGTGCAATTGAATGCATGTTTGGACTCGATGGTCTGCTGAATGACACTAAAGGTTCAGGATGGAAATTGGTTTATGTAGATTATGAGAGTGATGTTCTGCTTGTTGGAGATGATCCTTGGGAGGAATTTGTGGGCTGTGTCCGCTGCATCAGAATTTTATCACCTTCAGAAGTTCAGCAGATGAGTGAAGAAGGGATGAAGCTTCTAAACAGTGGAGCTTTGCAAGGGATGAAT 2811 0.4365 MASVEEKIKTGGGMVVGGQTLAAEMKLLKEMQEHSGVRKTLNSELWHACAGPLVSLPQVGSLVFYFPQGHSEQVAASTRRTATSQIPNYPNLPSQLLCQVQNVTLHADKETDEIYAQMTLQTLNSEKEVFPISDFGLKHSKHPSEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTIQPPTQELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAVHTEYRCITFFILKMMSIATRDEKSQLRVGVRRVNRQQTTLPSSVLSADSMHIGVLAAAAHAASNRSPFTIFYNPRACPSEFVVPLAKYRKAVFGTQVSVGMRFGMMFETEESGKRRYMGTIVGISDVDPLRWPGSKWRNIQVEWDEPGCGDKQNRVSVWEIETPESLFIFPSLTSSLKRPLQSGLLENEWGTLLRRPFVRVPENGTMDLSNSMPNLYSEHLMKMLFKPQLMNTNGAFLSTMQQESAATRAPLQDNLKAHLASAENMLLKNLHCQSIPDQPNSLNMQSLLKSDQPDKFHPLAKVDNHHPSGVVTDKLKLESEVLPDHIIDYPSMEGCNIEKMAANSVNQPGLPNQLTFHNQNQSPLLNQYSAWPMQPQLESSVPHPQMIDMAQADSAMVNGLLPQLDIDEWMAYASSQPFAGQNRPTGPLSDLQEHTSLQPQVVNPPLPSMNHEVWDHYVKNLKFLSQADQLTSICQPGLYNGISSSNSLRDLSAESNNQSEICVNVDVSNSVGTTMVDPSTSSTILDEFCTMKDREFQTPQDCMVGNLSSSQDVQSQITSASLAESHAFSLRDNSGGTSSSHVDFDESSFLQNNSWQQVPAPIRTYTKVQKAGSVGRSIDVTTFKNYEELIRAIECMFGLDGLLNDTKGSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPSEVQQMSEEGMKLLNSGALQGMN 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13024g00002 937 ProSiteProfiles PB1 domain profile. 832 916 IPR000270 GO:0005515
Mupr13024g00002 937 FunFam Auxin response factor 145 262 - -
Mupr13024g00002 937 SMART B3_2 147 262 IPR003340 GO:0003677
Mupr13024g00002 937 Pfam B3 DNA binding domain 147 227 IPR003340 GO:0003677
Mupr13024g00002 937 SUPERFAMILY DNA-binding pseudobarrel domain 135 289 IPR015300 -
Mupr13024g00002 937 Gene3D - 829 921 - -
Mupr13024g00002 937 ProSiteProfiles B3 DNA-binding domain profile. 147 262 IPR003340 GO:0003677
Mupr13024g00002 937 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 38 922 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mupr13024g00002 937 Pfam Auxin response factor 286 369 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mupr13024g00002 937 Pfam AUX/IAA family 829 919 IPR033389 -
Mupr13024g00002 937 SUPERFAMILY CAD & PB1 domains 834 911 - -
Mupr13024g00002 937 Gene3D - 324 396 - -
Mupr13024g00002 937 FunFam Auxin response factor 324 396 - -
Mupr13024g00002 937 CDD B3_DNA 146 227 IPR003340 GO:0003677
Mupr13024g00002 937 FunFam Auxin response factor 828 921 - -
Mupr13024g00002 937 Gene3D - 145 261 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13024g00002 Mupr-Chr13024 11060 15540 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13024g00002 20 936 B3 DNA Binding Superfamily AT1G19850 57.684 0.0 971
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mupr13024g00002 AUX_IAA 4.1e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13024g00002 K14486 - gmx:100813003 1696.4