Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13012g00003 ATGCCTGATACTAGGAAAAGGAAAGAGAACGAGGGAAAAGAGTGCAAATATTGTTTTAAAACACACAAAGATTTGGATATAGGATTGGTAAGAAAAGTCGATGCCCTTGCAACACAAGACCAAATCGACATGGGTCTTCCAGTCCATTTCTGCAAGAGCAATCTTCCAAAAGGGGATGAGGTGATGACTTTGATTGACGAGGATGGGAATGAGTATCCAACAATATATTTGGCACGAAAAACAGGACTTAGTGGTGGATGGAAAGGATTTGCGGTTGCCCATGACCTAGCTGATGGGGACGCTTTAATTTTTCAATTAATTAAGCGCACCACATTCAAGGTGTTCATTGTTAGAGCGAATAGTCCTTCAGAGGATAAACAGCTTAAAGATGAAAAATTAAGCAAACAAGTCTGTAATGTTAGAAAGGATATGTACCTGGATGAGAGAAAGGGGTCTTTCCTTCAGGATGAGAGAATTTGCAAAGCCAATGCTACTCTGTTAGCTTTTACGATAATAGACATGAGACATGTGGGTCTTGTGCGTGTCAAAGGGATAGTTGGTTCCATTTTTGTCTTCAATCAAAGTTGTTTGTATTTAAGTCTTGAAGCTGTGAAAGTTCTCGTATGTGGTGGAAGGAACGTCTTGGGTTCAGTTTTTGGTGGACTAGTAGTTTGGCTGACCTATGAAGTCTAA 693 0.4012 MPDTRKRKENEGKECKYCFKTHKDLDIGLVRKVDALATQDQIDMGLPVHFCKSNLPKGDEVMTLIDEDGNEYPTIYLARKTGLSGGWKGFAVAHDLADGDALIFQLIKRTTFKVFIVRANSPSEDKQLKDEKLSKQVCNVRKDMYLDERKGSFLQDERICKANATLLAFTIIDMRHVGLVRVKGIVGSIFVFNQSCLYLSLEAVKVLVCGGRNVLGSVFGGLVVWLTYEV 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13012g00003 230 Gene3D - 8 121 IPR015300 -
Mupr13012g00003 230 SMART B3_2 30 120 IPR003340 GO:0003677
Mupr13012g00003 230 ProSiteProfiles B3 DNA-binding domain profile. 29 120 IPR003340 GO:0003677
Mupr13012g00003 230 Pfam B3 DNA binding domain 43 116 IPR003340 GO:0003677
Mupr13012g00003 230 CDD B3_DNA 44 118 IPR003340 GO:0003677
Mupr13012g00003 230 SUPERFAMILY DNA-binding pseudobarrel domain 43 120 IPR015300 -
Mupr13012g00003 230 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 36 122 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13012g00003 Mupr-Chr13012 21199 23591 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13012g00003 44 127 B3 DNA Binding Superfamily AT5G42700 64.286 2.01e-33 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mupr13012g00003 B3 9.9e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr13012g00003 - - gmx:100797091 162.155