Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr13002g00001 ATGAAGAGGAGCAGTTTGATGAGTTGTGCCAACAAGACCCTAACAAAAGACTCCATCCATGTTGTCACCAACAAGAACAACCAAATGGCAAAAGAGTTTTGGGAGTGCAGCAACAACAACAACAACTCTCACAATGCAGATCAGGACTATGTGAATGGCTTCCCTTGGCCACCAAGATCATACACTTGTAGCTTCTGCAGGAAGGAGTTCAAGTCTGCTCAGGCACTTGGTGGACACATGAATGTTCATAGGAGGGATAGAGCAAGGTTGAGGCAGTCACCCCCAACTGAACCTCATCAAGGCCCTATCCCTATGCTCAACCTTAACCTTGACCCTACCACAACAACTAACCCTAACATTAACTCAACAACCTTGTTACCATCATCTTCTTCACCCCTCAAACCTGTCACTTGCACATTACCCTTGTTTGTTTCTCCCACTCCTCCTTCACCTTCCTCTGAGTTGAAGACATGGGTTGTTATGGATGGCATTCTGTTGAACAACCCTTTCAGCACAAAGAGTACCCCAGAGCACTCTAAGTCAAGGACTCCAGAAGATGGATGCAAAGTGTTGAAGAAAGGTGAGATTCTCAGGATGGACTTGGAGATAGGTTTGCCTAGAGATTATGATTTAGATCTGGAGCTTCGTTTGGGTGAAAAGCTTCCACTTATCATTTCCTAA 681 0.4508 MKRSSLMSCANKTLTKDSIHVVTNKNNQMAKEFWECSNNNNNSHNADQDYVNGFPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSPPTEPHQGPIPMLNLNLDPTTTTNPNINSTTLLPSSSSPLKPVTCTLPLFVSPTPPSPSSELKTWVVMDGILLNNPFSTKSTPEHSKSRTPEDGCKVLKKGEILRMDLEIGLPRDYDLDLELRLGEKLPLIIS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr13002g00001 226 Pfam C2H2-type zinc finger 61 85 - -
Mupr13002g00001 226 SUPERFAMILY beta-beta-alpha zinc fingers 58 87 IPR036236 -
Mupr13002g00001 226 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Mupr13002g00001 226 PANTHER OS07G0101800 PROTEIN 39 219 - -
Mupr13002g00001 226 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
Mupr13002g00001 226 Gene3D Classic Zinc Finger 57 100 - -
Mupr13002g00001 226 SMART c2h2final6 61 83 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr13002g00001 Mupr-Chr13002 12213 13139 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr13002g00001 34 218 C2H2 Transcription Factor Family AT3G23130 43.005 7.55e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mupr13002g00001 zf-C2H2_6 1.3e-06 CL0361