Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mupr12981g00001 ATGGCGACAACAGCTGCTTCCTCCCCTATCTGCAGCAAACACTCCTTCGCCCAATCTTCCATCTCGCTCACCCTTAACTTCCCAAACAGACTCGTATCCTTGAAACCCCAACTTTTCAGTCCTTCTCTCTCATTCTACCATCTTCCCCTGCCTTCGGTTTCCTTCCGAGAACACCCCGAACCCGAAACCTCCCAAAAACCAGAGCCAAACGCGTTACGCTCAAATCAATCAGGGAGGCTCTTTGTTGGAAACTTGCCTTACTCATTGCCCTCTTCCCAGTTGGCTCGGCTGTTTGGAGACGCTGGCAATGTTGTGTCCGTTGAGATTGTGTATGATGACATCGCGGATAGAAGTAGAGGGTTTGCGTTTGTTACAATGGGGAGCGTGGAGGAAGCTGAACGAGCGATTCGAATGTTTGATGGCTTTGAAATTGGAGCTAGGATTATTAAGGTAAACTTCACTGAAATACCCAAAAGAGGCAAAGGGCTAGTAGCGGGTTCAAACTATAGAGGCTATGTAGACAGCCCTCACAAAATTTATGCTGGAAACCTTGGTTGGGGTCTGACTTCACAGGATCTTAGAGATGCCTTTGCTGAGCAGCCAGGCTTCCTCAGTGCCAAGGTCATCTATGAAAGGAACAGTGGAAAATCTCAGGGATATGGGTTTGTCTCTTTTGAAACTGCTGAGGATGTAGAGGCTGCTTTGAATTCTATGAATGGTGTGGAGGTTCAAGGCCGGCCCTTACGACTGAATCTAGCTACAGATAGTAATTCATTAAATCACATAAACATCCAAGAACAAACTTATACCATGGACACCTTCCCTCCACAGTGGGTACATCTACATCCACTGTCAGATGTCATTACTAATGTTTAA 876 0.4646 MATTAASSPICSKHSFAQSSISLTLNFPNRLVSLKPQLFSPSLSFYHLPLPSVSFREHPEPETSQKPEPNALRSNQSGRLFVGNLPYSLPSSQLARLFGDAGNVVSVEIVYDDIADRSRGFAFVTMGSVEEAERAIRMFDGFEIGARIIKVNFTEIPKRGKGLVAGSNYRGYVDSPHKIYAGNLGWGLTSQDLRDAFAEQPGFLSAKVIYERNSGKSQGYGFVSFETAEDVEAALNSMNGVEVQGRPLRLNLATDSNSLNHINIQEQTYTMDTFPPQWVHLHPLSDVITNV 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mupr12981g00001 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 156 IPR000504 GO:0003723
Mupr12981g00001 291 SUPERFAMILY RNA-binding domain, RBD 173 256 IPR035979 GO:0003676
Mupr12981g00001 291 SMART rrm1_1 79 152 IPR000504 GO:0003723
Mupr12981g00001 291 SMART rrm1_1 178 251 IPR000504 GO:0003723
Mupr12981g00001 291 FunFam 33 kDa ribonucleoprotein, chloroplastic 159 261 - -
Mupr12981g00001 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 149 IPR000504 GO:0003723
Mupr12981g00001 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 179 249 IPR000504 GO:0003723
Mupr12981g00001 291 Gene3D - 166 261 IPR012677 -
Mupr12981g00001 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 177 255 IPR000504 GO:0003723
Mupr12981g00001 291 SUPERFAMILY RNA-binding domain, RBD 59 159 IPR035979 GO:0003676
Mupr12981g00001 291 CDD RRM2_NsCP33_like 178 253 - -
Mupr12981g00001 291 MobiDBLite consensus disorder prediction 56 75 - -
Mupr12981g00001 291 Gene3D - 52 162 IPR012677 -
Mupr12981g00001 291 PANTHER OS02G0815200 PROTEIN 57 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mupr12981g00001 Mupr-Chr12981 8275 10723 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mupr12981g00001 66 253 Eukaryotic Initiation Factors Gene Family AT3G16380 29.534 1.93e-18 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mupr12981g00001 - - gmx:100789843 384.415